Strain Fitness in Pseudomonas putida KT2440 around PP_0037

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0036 and PP_0037 are separated by 228 nucleotidesPP_0037 and PP_0039 are separated by 298 nucleotides PP_0036: PP_0036 - putative transcriptional regulator, at 39,272 to 40,240 _0036 PP_0037: PP_0037 - porin P, at 40,469 to 41,758 _0037 PP_0039: PP_0039 - hypothetical protein, at 42,057 to 43,082 _0039 Position (kb) 40 41 42Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 39.492 kb on - strand, within PP_0036at 39.542 kb on + strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.607 kb on + strand, within PP_0036at 39.608 kb on - strand, within PP_0036at 39.608 kb on - strand, within PP_0036at 39.775 kb on + strand, within PP_0036at 39.776 kb on - strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.800 kb on - strand, within PP_0036at 39.800 kb on - strand, within PP_0036at 39.800 kb on - strand, within PP_0036at 39.803 kb on + strand, within PP_0036at 39.803 kb on + strand, within PP_0036at 39.804 kb on - strand, within PP_0036at 39.804 kb on - strand, within PP_0036at 39.805 kb on + strand, within PP_0036at 39.805 kb on + strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.907 kb on - strand, within PP_0036at 40.007 kb on + strand, within PP_0036at 40.007 kb on + strand, within PP_0036at 40.007 kb on + strand, within PP_0036at 40.014 kb on + strand, within PP_0036at 40.046 kb on - strand, within PP_0036at 40.064 kb on + strand, within PP_0036at 40.087 kb on + strand, within PP_0036at 40.088 kb on - strand, within PP_0036at 40.136 kb on + strand, within PP_0036at 40.295 kb on + strandat 40.323 kb on + strandat 40.409 kb on - strandat 40.436 kb on + strandat 40.498 kb on - strandat 40.501 kb on - strandat 40.501 kb on - strandat 40.588 kb on - strandat 40.697 kb on + strand, within PP_0037at 40.698 kb on - strand, within PP_0037at 40.737 kb on - strand, within PP_0037at 40.751 kb on + strand, within PP_0037at 40.763 kb on + strand, within PP_0037at 40.763 kb on + strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.803 kb on - strand, within PP_0037at 40.826 kb on + strand, within PP_0037at 40.826 kb on + strand, within PP_0037at 40.827 kb on - strand, within PP_0037at 40.827 kb on - strand, within PP_0037at 40.868 kb on + strand, within PP_0037at 40.869 kb on - strand, within PP_0037at 40.869 kb on - strand, within PP_0037at 40.937 kb on + strand, within PP_0037at 40.938 kb on - strand, within PP_0037at 41.012 kb on + strand, within PP_0037at 41.012 kb on + strand, within PP_0037at 41.012 kb on + strand, within PP_0037at 41.012 kb on + strand, within PP_0037at 41.012 kb on + strand, within PP_0037at 41.013 kb on - strand, within PP_0037at 41.013 kb on - strand, within PP_0037at 41.044 kb on + strand, within PP_0037at 41.075 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.141 kb on + strand, within PP_0037at 41.141 kb on + strand, within PP_0037at 41.142 kb on - strand, within PP_0037at 41.212 kb on - strand, within PP_0037at 41.212 kb on - strand, within PP_0037at 41.215 kb on + strand, within PP_0037at 41.215 kb on + strand, within PP_0037at 41.215 kb on + strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.360 kb on + strand, within PP_0037at 41.360 kb on + strand, within PP_0037at 41.360 kb on + strand, within PP_0037at 41.361 kb on - strand, within PP_0037at 41.361 kb on - strand, within PP_0037at 41.418 kb on - strand, within PP_0037at 41.420 kb on + strand, within PP_0037at 41.435 kb on + strand, within PP_0037at 41.435 kb on + strand, within PP_0037at 41.435 kb on + strand, within PP_0037at 41.435 kb on + strand, within PP_0037at 41.435 kb on + strand, within PP_0037at 41.459 kb on - strand, within PP_0037at 41.462 kb on + strand, within PP_0037at 41.462 kb on + strand, within PP_0037at 41.462 kb on + strand, within PP_0037at 41.462 kb on + strand, within PP_0037at 41.463 kb on - strand, within PP_0037at 41.463 kb on - strand, within PP_0037at 41.463 kb on - strand, within PP_0037at 41.463 kb on - strand, within PP_0037at 41.491 kb on + strand, within PP_0037at 41.492 kb on - strand, within PP_0037at 41.534 kb on + strand, within PP_0037at 41.549 kb on - strand, within PP_0037at 41.549 kb on - strand, within PP_0037at 41.636 kb on + strandat 41.636 kb on + strandat 41.637 kb on - strandat 41.637 kb on - strandat 41.637 kb on - strandat 41.669 kb on + strandat 41.669 kb on + strandat 41.669 kb on + strandat 41.670 kb on - strandat 41.670 kb on - strandat 41.670 kb on - strandat 41.670 kb on - strandat 41.670 kb on - strandat 41.670 kb on - strandat 41.747 kb on + strandat 41.747 kb on + strandat 41.747 kb on + strandat 41.748 kb on - strandat 41.748 kb on - strandat 41.748 kb on - strandat 41.748 kb on - strandat 41.748 kb on - strandat 41.856 kb on + strandat 41.856 kb on + strandat 41.856 kb on + strandat 41.857 kb on - strandat 41.966 kb on + strandat 41.967 kb on - strandat 42.015 kb on + strandat 42.016 kb on - strandat 42.016 kb on - strandat 42.052 kb on + strandat 42.052 kb on + strandat 42.052 kb on + strandat 42.053 kb on - strandat 42.053 kb on - strandat 42.246 kb on + strand, within PP_0039at 42.246 kb on + strand, within PP_0039at 42.246 kb on + strand, within PP_0039at 42.246 kb on + strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.255 kb on + strand, within PP_0039at 42.256 kb on - strand, within PP_0039at 42.286 kb on + strand, within PP_0039at 42.287 kb on - strand, within PP_0039at 42.287 kb on - strand, within PP_0039at 42.340 kb on + strand, within PP_0039at 42.341 kb on - strand, within PP_0039at 42.457 kb on + strand, within PP_0039at 42.457 kb on + strand, within PP_0039at 42.458 kb on - strand, within PP_0039at 42.458 kb on - strand, within PP_0039at 42.507 kb on - strand, within PP_0039at 42.615 kb on + strand, within PP_0039at 42.615 kb on + strand, within PP_0039at 42.615 kb on + strand, within PP_0039at 42.616 kb on - strand, within PP_0039at 42.625 kb on + strand, within PP_0039at 42.757 kb on - strand, within PP_0039

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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39,492 - PP_0036 0.23 +0.8
39,542 + PP_0036 0.28 -2.5
39,543 - PP_0036 0.28 -2.5
39,543 - PP_0036 0.28 -0.5
39,543 - PP_0036 0.28 +0.6
39,607 + PP_0036 0.35 -0.2
39,608 - PP_0036 0.35 -1.9
39,608 - PP_0036 0.35 +0.4
39,775 + PP_0036 0.52 -0.2
39,776 - PP_0036 0.52 +0.3
39,799 + PP_0036 0.54 -1.5
39,799 + PP_0036 0.54 +1.0
39,799 + PP_0036 0.54 -1.4
39,799 + PP_0036 0.54 +1.2
39,799 + PP_0036 0.54 -1.2
39,799 + PP_0036 0.54 -2.4
39,799 + PP_0036 0.54 +1.1
39,799 + PP_0036 0.54 +0.2
39,800 - PP_0036 0.54 -0.3
39,800 - PP_0036 0.54 +0.7
39,800 - PP_0036 0.54 -0.8
39,803 + PP_0036 0.55 +1.7
39,803 + PP_0036 0.55 +0.3
39,804 - PP_0036 0.55 +0.2
39,804 - PP_0036 0.55 +0.3
39,805 + PP_0036 0.55 -2.0
39,805 + PP_0036 0.55 -0.5
39,806 - PP_0036 0.55 -1.2
39,806 - PP_0036 0.55 -1.9
39,806 - PP_0036 0.55 -0.0
39,806 - PP_0036 0.55 -0.2
39,907 - PP_0036 0.66 +1.3
40,007 + PP_0036 0.76 +0.5
40,007 + PP_0036 0.76 -1.0
40,007 + PP_0036 0.76 -0.3
40,014 + PP_0036 0.77 -0.5
40,046 - PP_0036 0.80 +0.1
40,064 + PP_0036 0.82 -2.7
40,087 + PP_0036 0.84 -1.0
40,088 - PP_0036 0.84 -0.0
40,136 + PP_0036 0.89 +1.7
40,295 + +0.7
40,323 + +0.0
40,409 - +1.9
40,436 + -0.4
40,498 - -1.5
40,501 - +0.9
40,501 - +1.0
40,588 - +0.5
40,697 + PP_0037 0.18 +0.4
40,698 - PP_0037 0.18 -2.0
40,737 - PP_0037 0.21 +1.4
40,751 + PP_0037 0.22 +1.5
40,763 + PP_0037 0.23 -0.2
40,763 + PP_0037 0.23 +1.1
40,764 - PP_0037 0.23 +1.4
40,764 - PP_0037 0.23 +0.9
40,764 - PP_0037 0.23 +0.5
40,764 - PP_0037 0.23 +0.5
40,764 - PP_0037 0.23 +0.1
40,764 - PP_0037 0.23 -0.5
40,803 - PP_0037 0.26 -0.4
40,826 + PP_0037 0.28 +2.6
40,826 + PP_0037 0.28 +0.6
40,827 - PP_0037 0.28 -1.3
40,827 - PP_0037 0.28 -0.1
40,868 + PP_0037 0.31 -0.8
40,869 - PP_0037 0.31 -0.8
40,869 - PP_0037 0.31 -0.5
40,937 + PP_0037 0.36 +0.3
40,938 - PP_0037 0.36 +0.3
41,012 + PP_0037 0.42 +1.7
41,012 + PP_0037 0.42 +0.7
41,012 + PP_0037 0.42 +2.0
41,012 + PP_0037 0.42 -1.2
41,012 + PP_0037 0.42 -1.4
41,013 - PP_0037 0.42 -0.5
41,013 - PP_0037 0.42 +0.4
41,044 + PP_0037 0.45 +1.0
41,075 + PP_0037 0.47 +1.0
41,082 + PP_0037 0.48 -1.2
41,082 + PP_0037 0.48 +0.2
41,082 + PP_0037 0.48 -0.2
41,082 + PP_0037 0.48 -1.9
41,082 + PP_0037 0.48 -1.0
41,082 + PP_0037 0.48 -1.7
41,082 + PP_0037 0.48 +2.1
41,082 + PP_0037 0.48 +0.0
41,083 - PP_0037 0.48 +1.2
41,083 - PP_0037 0.48 -0.8
41,083 - PP_0037 0.48 +0.9
41,083 - PP_0037 0.48 -1.0
41,141 + PP_0037 0.52 -1.2
41,141 + PP_0037 0.52 -2.3
41,142 - PP_0037 0.52 +2.2
41,212 - PP_0037 0.58 +2.2
41,212 - PP_0037 0.58 -0.7
41,215 + PP_0037 0.58 +0.1
41,215 + PP_0037 0.58 -0.8
41,215 + PP_0037 0.58 +2.1
41,216 - PP_0037 0.58 +1.0
41,216 - PP_0037 0.58 -0.2
41,216 - PP_0037 0.58 -2.6
41,216 - PP_0037 0.58 +1.1
41,360 + PP_0037 0.69 +0.1
41,360 + PP_0037 0.69 +1.7
41,360 + PP_0037 0.69 -2.7
41,361 - PP_0037 0.69 +1.1
41,361 - PP_0037 0.69 +0.8
41,418 - PP_0037 0.74 +1.0
41,420 + PP_0037 0.74 -1.5
41,435 + PP_0037 0.75 +0.4
41,435 + PP_0037 0.75 -0.1
41,435 + PP_0037 0.75 +0.6
41,435 + PP_0037 0.75 -1.6
41,435 + PP_0037 0.75 +0.4
41,459 - PP_0037 0.77 +1.2
41,462 + PP_0037 0.77 -1.1
41,462 + PP_0037 0.77 -0.1
41,462 + PP_0037 0.77 +1.0
41,462 + PP_0037 0.77 -0.5
41,463 - PP_0037 0.77 +0.2
41,463 - PP_0037 0.77 +0.6
41,463 - PP_0037 0.77 -0.4
41,463 - PP_0037 0.77 -0.0
41,491 + PP_0037 0.79 -2.4
41,492 - PP_0037 0.79 -1.2
41,534 + PP_0037 0.83 +1.1
41,549 - PP_0037 0.84 -1.9
41,549 - PP_0037 0.84 +0.9
41,636 + -2.7
41,636 + -2.4
41,637 - +0.9
41,637 - +0.3
41,637 - +0.5
41,669 + +0.6
41,669 + +1.7
41,669 + -2.9
41,670 - +1.3
41,670 - -3.5
41,670 - -1.0
41,670 - +0.9
41,670 - -0.1
41,670 - -3.5
41,747 + -1.0
41,747 + +0.6
41,747 + -1.0
41,748 - +0.6
41,748 - +1.2
41,748 - -1.7
41,748 - -0.3
41,748 - -0.6
41,856 + +0.8
41,856 + -0.4
41,856 + -0.2
41,857 - +0.4
41,966 + -0.5
41,967 - +1.3
42,015 + -1.3
42,016 - +1.6
42,016 - -0.7
42,052 + -1.6
42,052 + +1.2
42,052 + -1.3
42,053 - +0.4
42,053 - +1.1
42,246 + PP_0039 0.18 -1.5
42,246 + PP_0039 0.18 -0.6
42,246 + PP_0039 0.18 -2.6
42,246 + PP_0039 0.18 -2.6
42,247 - PP_0039 0.19 +1.6
42,247 - PP_0039 0.19 +0.5
42,247 - PP_0039 0.19 -1.2
42,247 - PP_0039 0.19 +0.3
42,247 - PP_0039 0.19 -0.6
42,247 - PP_0039 0.19 -1.0
42,255 + PP_0039 0.19 -1.8
42,256 - PP_0039 0.19 -1.2
42,286 + PP_0039 0.22 -1.0
42,287 - PP_0039 0.22 -3.8
42,287 - PP_0039 0.22 -1.0
42,340 + PP_0039 0.28 -0.5
42,341 - PP_0039 0.28 +0.2
42,457 + PP_0039 0.39 -0.2
42,457 + PP_0039 0.39 +1.8
42,458 - PP_0039 0.39 +0.9
42,458 - PP_0039 0.39 +0.6
42,507 - PP_0039 0.44 -1.6
42,615 + PP_0039 0.54 +0.3
42,615 + PP_0039 0.54 -0.1
42,615 + PP_0039 0.54 +0.2
42,616 - PP_0039 0.54 -0.5
42,625 + PP_0039 0.55 +0.4
42,757 - PP_0039 0.68 -0.4

Or see this region's nucleotide sequence