Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4800 and PP_4801 are separated by 2 nucleotides PP_4801 and PP_4802 overlap by 4 nucleotides PP_4802 and PP_4803 are separated by 73 nucleotides PP_4803 and PP_4804 are separated by 220 nucleotides
PP_4800: PP_4800 - Lipoyl synthase, at 5,463,448 to 5,464,464
_4800
PP_4801: PP_4801 - Octanoyltransferase, at 5,464,467 to 5,465,117
_4801
PP_4802: PP_4802 - putative lipoate regulatory protein, at 5,465,114 to 5,465,389
_4802
PP_4803: PP_4803 - D-alanyl-D-alanine carboxypeptidase, at 5,465,463 to 5,466,623
_4803
PP_4804: PP_4804 - RlpA-like lipoprotein, at 5,466,844 to 5,467,845
_4804
Position (kb) 5465
5466
5467 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5464.505 kb on - strand at 5465.407 kb on - strand at 5465.462 kb on - strand at 5465.462 kb on - strand at 5465.488 kb on - strand at 5465.682 kb on - strand, within PP_4803 at 5465.688 kb on - strand, within PP_4803 at 5465.688 kb on - strand, within PP_4803 at 5465.688 kb on - strand, within PP_4803 at 5465.688 kb on - strand, within PP_4803 at 5465.780 kb on - strand, within PP_4803 at 5466.034 kb on + strand at 5466.034 kb on + strand, within PP_4803 at 5466.035 kb on - strand, within PP_4803 at 5466.043 kb on + strand, within PP_4803 at 5466.043 kb on + strand, within PP_4803 at 5466.043 kb on + strand, within PP_4803 at 5466.107 kb on - strand, within PP_4803 at 5466.291 kb on + strand, within PP_4803 at 5466.407 kb on + strand, within PP_4803 at 5466.408 kb on - strand, within PP_4803 at 5466.408 kb on - strand, within PP_4803 at 5466.408 kb on - strand, within PP_4803 at 5466.409 kb on + strand, within PP_4803 at 5466.409 kb on + strand, within PP_4803 at 5466.501 kb on + strand, within PP_4803 at 5466.501 kb on + strand, within PP_4803 at 5466.501 kb on + strand, within PP_4803 at 5466.501 kb on + strand, within PP_4803 at 5466.501 kb on + strand, within PP_4803 at 5466.501 kb on + strand, within PP_4803 at 5466.502 kb on - strand, within PP_4803 at 5466.502 kb on - strand, within PP_4803 at 5466.502 kb on - strand, within PP_4803 at 5466.502 kb on - strand, within PP_4803 at 5466.505 kb on + strand, within PP_4803 at 5466.505 kb on + strand, within PP_4803 at 5466.506 kb on - strand, within PP_4803 at 5466.582 kb on + strand at 5466.582 kb on + strand at 5466.582 kb on + strand at 5466.582 kb on + strand at 5466.696 kb on - strand at 5466.736 kb on + strand at 5466.765 kb on + strand at 5466.765 kb on + strand at 5466.765 kb on + strand at 5466.765 kb on + strand at 5466.765 kb on + strand at 5466.765 kb on + strand at 5466.766 kb on - strand at 5466.766 kb on - strand at 5466.766 kb on - strand at 5466.766 kb on - strand at 5466.766 kb on - strand at 5466.766 kb on - strand at 5466.966 kb on + strand, within PP_4804 at 5466.967 kb on - strand, within PP_4804 at 5467.061 kb on - strand, within PP_4804 at 5467.108 kb on + strand, within PP_4804 at 5467.109 kb on - strand, within PP_4804 at 5467.431 kb on - strand, within PP_4804 at 5467.581 kb on - strand, within PP_4804 at 5467.601 kb on + strand, within PP_4804 at 5467.620 kb on + strand, within PP_4804
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,464,505 - -2.7 5,465,407 - -1.3 5,465,462 - -0.2 5,465,462 - -1.4 5,465,488 - -0.5 5,465,682 - PP_4803 0.19 +0.6 5,465,688 - PP_4803 0.19 -0.1 5,465,688 - PP_4803 0.19 +0.9 5,465,688 - PP_4803 0.19 +0.7 5,465,688 - PP_4803 0.19 +0.1 5,465,780 - PP_4803 0.27 +0.6 5,466,034 + +1.0 5,466,034 + PP_4803 0.49 +0.7 5,466,035 - PP_4803 0.49 +2.0 5,466,043 + PP_4803 0.50 -1.9 5,466,043 + PP_4803 0.50 -0.1 5,466,043 + PP_4803 0.50 -0.6 5,466,107 - PP_4803 0.55 -0.5 5,466,291 + PP_4803 0.71 +0.0 5,466,407 + PP_4803 0.81 +0.2 5,466,408 - PP_4803 0.81 +1.0 5,466,408 - PP_4803 0.81 +0.9 5,466,408 - PP_4803 0.81 +0.7 5,466,409 + PP_4803 0.81 -0.1 5,466,409 + PP_4803 0.81 -0.7 5,466,501 + PP_4803 0.89 +1.1 5,466,501 + PP_4803 0.89 +1.8 5,466,501 + PP_4803 0.89 -0.5 5,466,501 + PP_4803 0.89 +1.6 5,466,501 + PP_4803 0.89 +0.8 5,466,501 + PP_4803 0.89 -1.3 5,466,502 - PP_4803 0.89 +1.2 5,466,502 - PP_4803 0.89 +1.1 5,466,502 - PP_4803 0.89 +0.1 5,466,502 - PP_4803 0.89 +2.8 5,466,505 + PP_4803 0.90 -1.3 5,466,505 + PP_4803 0.90 +0.9 5,466,506 - PP_4803 0.90 +0.6 5,466,582 + +0.2 5,466,582 + +1.4 5,466,582 + +0.3 5,466,582 + -2.7 5,466,696 - -0.0 5,466,736 + -0.6 5,466,765 + +0.7 5,466,765 + +1.1 5,466,765 + -1.8 5,466,765 + -0.0 5,466,765 + +0.1 5,466,765 + -0.1 5,466,766 - -0.6 5,466,766 - -0.3 5,466,766 - -0.0 5,466,766 - -0.9 5,466,766 - +1.2 5,466,766 - +0.2 5,466,966 + PP_4804 0.12 -1.5 5,466,967 - PP_4804 0.12 +1.5 5,467,061 - PP_4804 0.22 -1.5 5,467,108 + PP_4804 0.26 -1.0 5,467,109 - PP_4804 0.26 +0.8 5,467,431 - PP_4804 0.59 -0.7 5,467,581 - PP_4804 0.74 +0.4 5,467,601 + PP_4804 0.76 +2.1 5,467,620 + PP_4804 0.77 +2.5
Or see this region's nucleotide sequence