Strain Fitness in Pseudomonas putida KT2440 around PP_0122

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0121 and PP_0122 are separated by 69 nucleotidesPP_0122 and PP_0123 are separated by 75 nucleotides PP_0121: PP_0121 - homoserine kinase, at 126,140 to 127,090 _0121 PP_0122: PP_0122 - conserved exported protein of unknown function, at 127,160 to 127,447 _0122 PP_0123: PP_0123 - DNA polymerase I, 5, at 127,523 to 130,270 _0123 Position (kb) 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1at 126.345 kb on + strandat 126.629 kb on + strandat 127.162 kb on - strandat 127.291 kb on - strand, within PP_0122at 127.291 kb on - strand, within PP_0122at 127.312 kb on - strand, within PP_0122at 127.327 kb on + strand, within PP_0122at 127.328 kb on - strand, within PP_0122at 127.424 kb on + strandat 127.425 kb on - strandat 127.450 kb on + strandat 127.455 kb on + strandat 127.455 kb on + strandat 127.455 kb on + strandat 127.456 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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126,345 + +0.2
126,629 + -0.6
127,162 - -1.0
127,291 - PP_0122 0.45 -0.9
127,291 - PP_0122 0.45 -0.1
127,312 - PP_0122 0.53 -0.3
127,327 + PP_0122 0.58 -0.5
127,328 - PP_0122 0.58 -3.1
127,424 + -1.4
127,425 - +0.2
127,450 + +0.1
127,455 + -1.3
127,455 + +0.1
127,455 + -2.7
127,456 - +0.4

Or see this region's nucleotide sequence