Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0698 and PP_0699 are separated by 227 nucleotides PP_0699 and PP_t70 are separated by 130 nucleotides PP_t70 and PP_0700 are separated by 95 nucleotides
PP_0698: PP_0698 - Transcriptional regulator, LysR family, at 811,334 to 812,251
_0698
PP_0699: PP_0699 - Transporter, LysE family, at 812,479 to 813,093
_0699
PP_t70: PP_t70 - tRNA-Met, at 813,224 to 813,300
_t70
PP_0700: PP_0700 - putative Transmembrane sensor, at 813,396 to 814,382
_0700
Position (kb) 813
814 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 812.301 kb on - strand at 812.301 kb on - strand at 812.301 kb on - strand at 812.312 kb on + strand at 812.312 kb on + strand at 812.312 kb on + strand at 812.312 kb on + strand at 812.313 kb on - strand at 812.313 kb on - strand at 812.313 kb on - strand at 812.313 kb on - strand at 812.323 kb on - strand at 812.361 kb on + strand at 812.362 kb on - strand at 812.362 kb on - strand at 812.362 kb on - strand at 812.366 kb on - strand at 812.401 kb on - strand at 812.422 kb on + strand at 812.638 kb on + strand, within PP_0699 at 812.638 kb on + strand, within PP_0699 at 812.638 kb on + strand, within PP_0699 at 812.638 kb on + strand, within PP_0699 at 812.639 kb on - strand at 812.639 kb on - strand, within PP_0699 at 812.734 kb on + strand, within PP_0699 at 812.735 kb on - strand, within PP_0699 at 812.735 kb on - strand, within PP_0699 at 812.760 kb on + strand, within PP_0699 at 812.760 kb on + strand, within PP_0699 at 812.798 kb on + strand, within PP_0699 at 812.986 kb on - strand, within PP_0699 at 813.086 kb on + strand at 813.086 kb on + strand at 813.086 kb on + strand at 813.086 kb on + strand at 813.087 kb on - strand at 813.103 kb on - strand at 813.504 kb on + strand, within PP_0700 at 813.505 kb on - strand, within PP_0700 at 813.650 kb on + strand, within PP_0700 at 813.651 kb on - strand, within PP_0700 at 813.651 kb on - strand, within PP_0700 at 813.783 kb on + strand, within PP_0700 at 813.784 kb on - strand, within PP_0700 at 813.802 kb on + strand, within PP_0700 at 813.803 kb on - strand, within PP_0700 at 813.803 kb on - strand, within PP_0700 at 813.804 kb on + strand, within PP_0700 at 813.805 kb on - strand, within PP_0700 at 813.805 kb on - strand, within PP_0700 at 813.972 kb on + strand, within PP_0700 at 813.972 kb on + strand, within PP_0700 at 813.972 kb on + strand, within PP_0700 at 813.973 kb on - strand, within PP_0700 at 814.037 kb on - strand, within PP_0700 at 814.037 kb on - strand, within PP_0700 at 814.042 kb on + strand, within PP_0700 at 814.043 kb on - strand, within PP_0700 at 814.043 kb on - strand, within PP_0700 at 814.180 kb on + strand, within PP_0700 at 814.200 kb on + strand, within PP_0700 at 814.200 kb on + strand, within PP_0700 at 814.201 kb on - strand, within PP_0700 at 814.201 kb on - strand, within PP_0700
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 812,301 - +0.6 812,301 - +0.9 812,301 - +0.2 812,312 + +0.5 812,312 + +1.2 812,312 + -0.2 812,312 + -2.9 812,313 - +1.7 812,313 - -2.3 812,313 - -1.4 812,313 - -2.5 812,323 - +0.1 812,361 + +0.1 812,362 - +0.2 812,362 - -1.8 812,362 - +0.1 812,366 - +0.2 812,401 - -2.2 812,422 + +0.6 812,638 + PP_0699 0.26 +1.0 812,638 + PP_0699 0.26 +1.4 812,638 + PP_0699 0.26 +0.1 812,638 + PP_0699 0.26 +0.8 812,639 - +0.8 812,639 - PP_0699 0.26 +0.8 812,734 + PP_0699 0.41 +0.8 812,735 - PP_0699 0.42 -1.8 812,735 - PP_0699 0.42 +0.3 812,760 + PP_0699 0.46 -1.2 812,760 + PP_0699 0.46 +0.2 812,798 + PP_0699 0.52 +0.1 812,986 - PP_0699 0.82 -0.5 813,086 + +1.3 813,086 + +0.1 813,086 + -3.1 813,086 + -2.4 813,087 - -0.2 813,103 - +0.7 813,504 + PP_0700 0.11 +0.7 813,505 - PP_0700 0.11 +0.3 813,650 + PP_0700 0.26 -2.7 813,651 - PP_0700 0.26 +1.9 813,651 - PP_0700 0.26 -1.3 813,783 + PP_0700 0.39 -0.1 813,784 - PP_0700 0.39 +0.9 813,802 + PP_0700 0.41 -1.2 813,803 - PP_0700 0.41 -1.9 813,803 - PP_0700 0.41 +0.2 813,804 + PP_0700 0.41 +0.7 813,805 - PP_0700 0.41 -2.7 813,805 - PP_0700 0.41 -0.1 813,972 + PP_0700 0.58 -2.6 813,972 + PP_0700 0.58 -0.8 813,972 + PP_0700 0.58 -0.8 813,973 - PP_0700 0.58 +0.1 814,037 - PP_0700 0.65 -0.1 814,037 - PP_0700 0.65 -2.0 814,042 + PP_0700 0.65 -3.0 814,043 - PP_0700 0.66 -0.7 814,043 - PP_0700 0.66 -0.2 814,180 + PP_0700 0.79 -0.3 814,200 + PP_0700 0.81 +0.4 814,200 + PP_0700 0.81 -0.1 814,201 - PP_0700 0.82 +0.6 814,201 - PP_0700 0.82 -0.3
Or see this region's nucleotide sequence