Strain Fitness in Pseudomonas putida KT2440 around PP_0741

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0739 and PP_0740 overlap by 10 nucleotidesPP_0740 and PP_0741 overlap by 11 nucleotidesPP_0741 and PP_0742 are separated by 103 nucleotides PP_0739: PP_0739 - deoxyribodipyrimidine photolyase, at 857,381 to 858,823 _0739 PP_0740: PP_0740 - Transcriptional regulator, MerR family, at 858,814 to 859,713 _0740 PP_0741: PP_0741 - conserved protein of unknown function, at 859,703 to 860,671 _0741 PP_0742: PP_0742 - conserved exported protein of unknown function, at 860,775 to 861,761 _0742 Position (kb) 859 860 861Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 858.832 kb on + strandat 858.832 kb on + strandat 858.832 kb on + strandat 858.832 kb on + strandat 858.832 kb on + strandat 858.833 kb on - strandat 858.838 kb on + strandat 858.838 kb on + strandat 858.838 kb on + strandat 858.838 kb on + strandat 858.839 kb on - strandat 859.039 kb on + strand, within PP_0740at 859.040 kb on - strand, within PP_0740at 859.136 kb on - strand, within PP_0740at 859.153 kb on + strand, within PP_0740at 859.154 kb on - strand, within PP_0740at 859.154 kb on - strand, within PP_0740at 859.154 kb on - strand, within PP_0740at 859.154 kb on - strand, within PP_0740at 859.154 kb on - strand, within PP_0740at 859.230 kb on - strand, within PP_0740at 859.230 kb on - strand, within PP_0740at 859.298 kb on + strand, within PP_0740at 859.298 kb on + strand, within PP_0740at 859.299 kb on - strand, within PP_0740at 859.299 kb on - strand, within PP_0740at 859.749 kb on + strandat 859.750 kb on - strandat 859.750 kb on - strandat 859.750 kb on - strandat 859.750 kb on - strandat 859.767 kb on + strandat 859.817 kb on + strand, within PP_0741at 859.817 kb on + strand, within PP_0741at 859.818 kb on - strand, within PP_0741at 859.927 kb on + strand, within PP_0741at 859.928 kb on - strand, within PP_0741at 860.082 kb on + strand, within PP_0741at 860.082 kb on + strand, within PP_0741at 860.083 kb on - strand, within PP_0741at 860.088 kb on + strand, within PP_0741at 860.089 kb on - strand, within PP_0741at 860.158 kb on - strand, within PP_0741at 860.174 kb on + strand, within PP_0741at 860.174 kb on + strand, within PP_0741at 860.222 kb on + strand, within PP_0741at 860.222 kb on + strand, within PP_0741at 860.222 kb on + strand, within PP_0741at 860.223 kb on - strand, within PP_0741at 860.262 kb on + strand, within PP_0741at 860.263 kb on - strand, within PP_0741at 860.263 kb on - strand, within PP_0741at 860.263 kb on - strand, within PP_0741at 860.401 kb on - strand, within PP_0741at 860.401 kb on - strand, within PP_0741at 860.401 kb on - strand, within PP_0741at 860.599 kb on - strandat 860.744 kb on - strandat 860.753 kb on - strandat 860.763 kb on + strandat 860.765 kb on + strandat 860.766 kb on - strandat 860.766 kb on - strandat 860.766 kb on - strandat 860.869 kb on + strandat 860.869 kb on + strandat 860.870 kb on - strandat 860.870 kb on - strandat 860.870 kb on - strandat 860.870 kb on - strandat 860.870 kb on - strandat 860.916 kb on - strand, within PP_0742at 860.929 kb on + strand, within PP_0742at 860.930 kb on - strand, within PP_0742at 860.930 kb on - strand, within PP_0742at 860.930 kb on - strand, within PP_0742at 861.170 kb on + strand, within PP_0742at 861.209 kb on + strand, within PP_0742at 861.210 kb on - strand, within PP_0742at 861.210 kb on - strand, within PP_0742at 861.310 kb on + strand, within PP_0742at 861.353 kb on - strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.483 kb on - strand, within PP_0742at 861.483 kb on - strand, within PP_0742at 861.500 kb on - strand, within PP_0742at 861.500 kb on - strand, within PP_0742at 861.505 kb on + strand, within PP_0742at 861.505 kb on + strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.592 kb on + strand, within PP_0742at 861.593 kb on - strand, within PP_0742

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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858,832 + -1.2
858,832 + +0.7
858,832 + -2.7
858,832 + +0.7
858,832 + +0.0
858,833 - -2.0
858,838 + +0.6
858,838 + +0.4
858,838 + +0.7
858,838 + +1.7
858,839 - -2.9
859,039 + PP_0740 0.25 -0.6
859,040 - PP_0740 0.25 +0.3
859,136 - PP_0740 0.36 -1.4
859,153 + PP_0740 0.38 -1.6
859,154 - PP_0740 0.38 -1.8
859,154 - PP_0740 0.38 +0.0
859,154 - PP_0740 0.38 -3.2
859,154 - PP_0740 0.38 +0.4
859,154 - PP_0740 0.38 -1.9
859,230 - PP_0740 0.46 +1.6
859,230 - PP_0740 0.46 +0.0
859,298 + PP_0740 0.54 -0.3
859,298 + PP_0740 0.54 +0.2
859,299 - PP_0740 0.54 -0.2
859,299 - PP_0740 0.54 -0.4
859,749 + -2.1
859,750 - -3.9
859,750 - +0.8
859,750 - -1.7
859,750 - -0.4
859,767 + -2.2
859,817 + PP_0741 0.12 +1.0
859,817 + PP_0741 0.12 -0.4
859,818 - PP_0741 0.12 +1.9
859,927 + PP_0741 0.23 -2.3
859,928 - PP_0741 0.23 +0.8
860,082 + PP_0741 0.39 +0.5
860,082 + PP_0741 0.39 -1.9
860,083 - PP_0741 0.39 -0.3
860,088 + PP_0741 0.40 -0.5
860,089 - PP_0741 0.40 +2.3
860,158 - PP_0741 0.47 +1.2
860,174 + PP_0741 0.49 -3.3
860,174 + PP_0741 0.49 +1.4
860,222 + PP_0741 0.54 +1.1
860,222 + PP_0741 0.54 +1.1
860,222 + PP_0741 0.54 -0.4
860,223 - PP_0741 0.54 +0.3
860,262 + PP_0741 0.58 -0.3
860,263 - PP_0741 0.58 -0.1
860,263 - PP_0741 0.58 +0.8
860,263 - PP_0741 0.58 +2.4
860,401 - PP_0741 0.72 +0.7
860,401 - PP_0741 0.72 +0.4
860,401 - PP_0741 0.72 +2.2
860,599 - +1.8
860,744 - +0.0
860,753 - -1.1
860,763 + -0.3
860,765 + -0.3
860,766 - +0.3
860,766 - +1.0
860,766 - -3.5
860,869 + -1.3
860,869 + -0.3
860,870 - +0.9
860,870 - +0.1
860,870 - +0.3
860,870 - +0.1
860,870 - +0.8
860,916 - PP_0742 0.14 -3.0
860,929 + PP_0742 0.16 -1.5
860,930 - PP_0742 0.16 +0.1
860,930 - PP_0742 0.16 -1.0
860,930 - PP_0742 0.16 +0.5
861,170 + PP_0742 0.40 +1.7
861,209 + PP_0742 0.44 -0.5
861,210 - PP_0742 0.44 +1.0
861,210 - PP_0742 0.44 +2.0
861,310 + PP_0742 0.54 +0.2
861,353 - PP_0742 0.59 -1.3
861,482 + PP_0742 0.72 -2.9
861,482 + PP_0742 0.72 -0.6
861,482 + PP_0742 0.72 -0.8
861,482 + PP_0742 0.72 +0.2
861,482 + PP_0742 0.72 +0.7
861,482 + PP_0742 0.72 +0.2
861,483 - PP_0742 0.72 -0.4
861,483 - PP_0742 0.72 -3.8
861,500 - PP_0742 0.73 +1.1
861,500 - PP_0742 0.73 -1.2
861,505 + PP_0742 0.74 +1.2
861,505 + PP_0742 0.74 -1.5
861,506 - PP_0742 0.74 +0.1
861,506 - PP_0742 0.74 -0.8
861,506 - PP_0742 0.74 -2.7
861,506 - PP_0742 0.74 +1.5
861,506 - PP_0742 0.74 -0.3
861,506 - PP_0742 0.74 +1.6
861,592 + PP_0742 0.83 +1.1
861,593 - PP_0742 0.83 -1.4

Or see this region's nucleotide sequence