Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0332 and PP_0333 are separated by 181 nucleotides PP_0333 and PP_0334 are separated by 149 nucleotides
PP_0332: PP_0332 - putative Acyltransferase, at 398,696 to 399,583
_0332
PP_0333: PP_0333 - conserved exported protein of unknown function, at 399,765 to 400,265
_0333
PP_0334: PP_0334 - transposase, at 400,415 to 401,473
_0334
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 398.860 kb on + strand, within PP_0332 at 398.900 kb on - strand, within PP_0332 at 399.001 kb on - strand, within PP_0332 at 399.007 kb on - strand, within PP_0332 at 399.061 kb on - strand, within PP_0332 at 399.265 kb on + strand, within PP_0332 at 399.265 kb on + strand, within PP_0332 at 399.266 kb on - strand, within PP_0332 at 399.524 kb on + strand at 399.524 kb on + strand at 399.525 kb on - strand at 399.532 kb on + strand at 399.533 kb on - strand at 399.553 kb on + strand at 399.554 kb on - strand at 399.583 kb on + strand at 399.584 kb on - strand at 399.584 kb on - strand at 399.608 kb on - strand at 399.608 kb on - strand at 399.608 kb on - strand at 399.624 kb on + strand at 399.625 kb on - strand at 399.625 kb on - strand at 399.641 kb on + strand at 399.687 kb on + strand at 399.687 kb on + strand at 399.687 kb on + strand at 399.687 kb on + strand at 399.688 kb on - strand at 399.696 kb on + strand at 399.697 kb on - strand at 399.697 kb on - strand at 399.716 kb on + strand at 399.717 kb on - strand at 399.735 kb on - strand at 399.778 kb on + strand at 399.827 kb on + strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.831 kb on + strand, within PP_0333 at 399.831 kb on + strand, within PP_0333 at 399.841 kb on - strand, within PP_0333 at 399.848 kb on + strand, within PP_0333 at 399.849 kb on - strand, within PP_0333 at 400.005 kb on + strand, within PP_0333 at 400.005 kb on + strand, within PP_0333 at 400.006 kb on - strand, within PP_0333 at 400.173 kb on + strand, within PP_0333 at 400.282 kb on + strand at 400.282 kb on + strand at 400.283 kb on - strand at 400.283 kb on - strand at 400.283 kb on - strand at 400.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 398,860 + PP_0332 0.18 +0.4 398,900 - PP_0332 0.23 -0.5 399,001 - PP_0332 0.34 +1.6 399,007 - PP_0332 0.35 +0.6 399,061 - PP_0332 0.41 -0.1 399,265 + PP_0332 0.64 +0.3 399,265 + PP_0332 0.64 +0.2 399,266 - PP_0332 0.64 +2.7 399,524 + +1.1 399,524 + -3.1 399,525 - -1.3 399,532 + -3.0 399,533 - -1.4 399,553 + +0.4 399,554 - -0.3 399,583 + -0.4 399,584 - -2.9 399,584 - -2.6 399,608 - +2.7 399,608 - -0.2 399,608 - -2.3 399,624 + -1.8 399,625 - -2.1 399,625 - +0.1 399,641 + -1.1 399,687 + -0.2 399,687 + -0.6 399,687 + +0.6 399,687 + +0.3 399,688 - +0.8 399,696 + +0.8 399,697 - +0.3 399,697 - -2.1 399,716 + +0.5 399,717 - +1.0 399,735 - +1.0 399,778 + +0.7 399,827 + PP_0333 0.12 +1.4 399,828 - PP_0333 0.13 +0.1 399,828 - PP_0333 0.13 +1.3 399,828 - PP_0333 0.13 +0.7 399,828 - PP_0333 0.13 +1.3 399,831 + PP_0333 0.13 +0.3 399,831 + PP_0333 0.13 -2.2 399,841 - PP_0333 0.15 +0.1 399,848 + PP_0333 0.17 -1.5 399,849 - PP_0333 0.17 -2.4 400,005 + PP_0333 0.48 -1.6 400,005 + PP_0333 0.48 -2.5 400,006 - PP_0333 0.48 -2.1 400,173 + PP_0333 0.81 -2.7 400,282 + +0.7 400,282 + +0.1 400,283 - +1.8 400,283 - -0.0 400,283 - +0.5 400,290 - +0.7
Or see this region's nucleotide sequence