Strain Fitness in Pseudomonas putida KT2440 around PP_0222

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0220 and PP_0221 are separated by 1 nucleotidesPP_0221 and PP_0222 overlap by 8 nucleotidesPP_0222 and PP_0223 overlap by 1 nucleotides PP_0220: PP_0220 - methionine import ATP-binding protein metN2, at 272,658 to 273,767 _0220 PP_0221: PP_0221 - methionine ABC transporter periplasmic-binding lipoprotein (metQ-like protein), at 273,769 to 274,569 _0221 PP_0222: PP_0222 - Monooxygenase, DszA family, at 274,562 to 275,947 _0222 PP_0223: PP_0223 - Monooxygenase, DszC family, at 275,947 to 277,167 _0223 Position (kb) 274 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 273.644 kb on - strand, within PP_0220at 273.791 kb on + strandat 273.792 kb on - strandat 273.792 kb on - strandat 273.792 kb on - strandat 273.792 kb on - strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.915 kb on - strand, within PP_0221at 273.915 kb on - strand, within PP_0221at 273.954 kb on + strand, within PP_0221at 273.983 kb on + strand, within PP_0221at 273.983 kb on + strand, within PP_0221at 273.983 kb on + strand, within PP_0221at 273.984 kb on - strand, within PP_0221at 274.103 kb on + strand, within PP_0221at 274.104 kb on - strand, within PP_0221at 274.337 kb on + strand, within PP_0221at 274.337 kb on + strand, within PP_0221at 274.476 kb on + strand, within PP_0221at 274.597 kb on + strandat 274.684 kb on - strandat 274.696 kb on - strandat 274.853 kb on + strand, within PP_0222at 274.853 kb on + strand, within PP_0222at 274.853 kb on + strand, within PP_0222at 274.854 kb on - strand, within PP_0222at 274.857 kb on + strand, within PP_0222at 275.052 kb on + strand, within PP_0222at 275.317 kb on - strand, within PP_0222at 275.331 kb on + strand, within PP_0222at 275.331 kb on + strand, within PP_0222at 275.379 kb on + strand, within PP_0222at 275.379 kb on + strand, within PP_0222at 275.380 kb on - strand, within PP_0222at 275.380 kb on - strand, within PP_0222at 275.380 kb on - strand, within PP_0222at 275.380 kb on - strand, within PP_0222at 275.442 kb on + strand, within PP_0222at 275.442 kb on + strand, within PP_0222at 275.442 kb on + strand, within PP_0222at 275.443 kb on - strand, within PP_0222at 275.457 kb on + strand, within PP_0222at 275.610 kb on + strand, within PP_0222at 275.611 kb on - strand, within PP_0222at 275.638 kb on + strand, within PP_0222at 275.751 kb on + strand, within PP_0222at 275.751 kb on + strand, within PP_0222at 275.752 kb on - strand, within PP_0222at 275.752 kb on - strand, within PP_0222at 275.752 kb on - strand, within PP_0222at 275.760 kb on + strand, within PP_0222at 275.760 kb on + strand, within PP_0222at 275.760 kb on + strand, within PP_0222at 275.761 kb on - strand, within PP_0222at 275.761 kb on - strand, within PP_0222at 275.764 kb on + strand, within PP_0222at 275.836 kb on - strandat 275.836 kb on - strandat 275.850 kb on + strandat 275.851 kb on - strandat 275.851 kb on - strandat 275.987 kb on + strandat 275.988 kb on - strandat 275.988 kb on - strandat 275.990 kb on + strandat 275.990 kb on + strandat 275.990 kb on + strandat 275.990 kb on + strandat 275.990 kb on + strandat 275.990 kb on + strandat 275.991 kb on - strandat 275.991 kb on - strandat 275.991 kb on - strandat 275.991 kb on - strandat 275.991 kb on - strandat 275.991 kb on - strandat 275.991 kb on - strandat 275.991 kb on - strandat 276.008 kb on + strandat 276.009 kb on - strandat 276.009 kb on - strandat 276.227 kb on + strand, within PP_0223at 276.384 kb on - strand, within PP_0223at 276.399 kb on + strand, within PP_0223at 276.400 kb on - strand, within PP_0223at 276.500 kb on + strand, within PP_0223at 276.501 kb on - strand, within PP_0223at 276.501 kb on - strand, within PP_0223at 276.613 kb on + strand, within PP_0223at 276.613 kb on + strand, within PP_0223at 276.613 kb on + strand, within PP_0223at 276.614 kb on + strand, within PP_0223at 276.614 kb on - strand, within PP_0223at 276.614 kb on - strand, within PP_0223at 276.614 kb on - strandat 276.614 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.675 kb on - strand, within PP_0223at 276.803 kb on + strand, within PP_0223

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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273,644 - PP_0220 0.89 +0.1
273,791 + +1.1
273,792 - +1.0
273,792 - -0.1
273,792 - +1.0
273,792 - +1.5
273,845 + +1.5
273,845 + -1.0
273,845 + +0.6
273,845 + +0.7
273,845 + +0.9
273,846 - +0.4
273,846 - -2.7
273,846 - -0.4
273,846 - -0.1
273,846 - +0.7
273,846 - +0.4
273,914 + PP_0221 0.18 -3.0
273,914 + PP_0221 0.18 -1.3
273,914 + PP_0221 0.18 -0.4
273,914 + PP_0221 0.18 -0.6
273,914 + PP_0221 0.18 -1.7
273,915 - PP_0221 0.18 +0.3
273,915 - PP_0221 0.18 -1.6
273,954 + PP_0221 0.23 -2.9
273,983 + PP_0221 0.27 +0.4
273,983 + PP_0221 0.27 -1.6
273,983 + PP_0221 0.27 +0.7
273,984 - PP_0221 0.27 +1.1
274,103 + PP_0221 0.42 -0.0
274,104 - PP_0221 0.42 -2.1
274,337 + PP_0221 0.71 +0.6
274,337 + PP_0221 0.71 -0.8
274,476 + PP_0221 0.88 -1.3
274,597 + -2.8
274,684 - -2.7
274,696 - +0.2
274,853 + PP_0222 0.21 -1.8
274,853 + PP_0222 0.21 -0.4
274,853 + PP_0222 0.21 +0.7
274,854 - PP_0222 0.21 -0.7
274,857 + PP_0222 0.21 +0.8
275,052 + PP_0222 0.35 -0.6
275,317 - PP_0222 0.54 +1.2
275,331 + PP_0222 0.55 +1.7
275,331 + PP_0222 0.55 -0.5
275,379 + PP_0222 0.59 +1.1
275,379 + PP_0222 0.59 -0.1
275,380 - PP_0222 0.59 -0.2
275,380 - PP_0222 0.59 +0.2
275,380 - PP_0222 0.59 +2.9
275,380 - PP_0222 0.59 +1.3
275,442 + PP_0222 0.63 +1.7
275,442 + PP_0222 0.63 +0.6
275,442 + PP_0222 0.63 -0.5
275,443 - PP_0222 0.64 +0.6
275,457 + PP_0222 0.65 +0.3
275,610 + PP_0222 0.76 -3.0
275,611 - PP_0222 0.76 -0.2
275,638 + PP_0222 0.78 +0.6
275,751 + PP_0222 0.86 -0.9
275,751 + PP_0222 0.86 +0.5
275,752 - PP_0222 0.86 +0.5
275,752 - PP_0222 0.86 -2.1
275,752 - PP_0222 0.86 -3.2
275,760 + PP_0222 0.86 +1.1
275,760 + PP_0222 0.86 -1.0
275,760 + PP_0222 0.86 +0.3
275,761 - PP_0222 0.87 +1.1
275,761 - PP_0222 0.87 -2.1
275,764 + PP_0222 0.87 +1.6
275,836 - +0.2
275,836 - -3.4
275,850 + -1.5
275,851 - +0.8
275,851 - -1.8
275,987 + +3.4
275,988 - -1.6
275,988 - +1.1
275,990 + -0.7
275,990 + +0.2
275,990 + -0.8
275,990 + +0.1
275,990 + -2.3
275,990 + +1.7
275,991 - -0.3
275,991 - -0.1
275,991 - +0.9
275,991 - -0.4
275,991 - -1.6
275,991 - -0.7
275,991 - +2.0
275,991 - -1.0
276,008 + -1.6
276,009 - +1.1
276,009 - -2.2
276,227 + PP_0223 0.23 +1.7
276,384 - PP_0223 0.36 +0.2
276,399 + PP_0223 0.37 +1.9
276,400 - PP_0223 0.37 -2.0
276,500 + PP_0223 0.45 +0.2
276,501 - PP_0223 0.45 -2.2
276,501 - PP_0223 0.45 +0.4
276,613 + PP_0223 0.55 +0.5
276,613 + PP_0223 0.55 -2.4
276,613 + PP_0223 0.55 -0.9
276,614 + PP_0223 0.55 -0.0
276,614 - PP_0223 0.55 -0.3
276,614 - PP_0223 0.55 +2.5
276,614 - +0.8
276,614 - PP_0223 0.55 -0.1
276,657 - PP_0223 0.58 +1.4
276,657 - PP_0223 0.58 +1.1
276,657 - PP_0223 0.58 -0.1
276,657 - PP_0223 0.58 -2.1
276,657 - PP_0223 0.58 -0.0
276,657 - PP_0223 0.58 -1.2
276,657 - PP_0223 0.58 +0.2
276,675 - PP_0223 0.60 -0.2
276,803 + PP_0223 0.70 -1.6

Or see this region's nucleotide sequence