Strain Fitness in Pseudomonas putida KT2440 around PP_0027

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0026 and PP_0027 are separated by 67 nucleotidesPP_0027 and PP_0028 are separated by 32 nucleotidesPP_0028 and PP_5422 are separated by 198 nucleotides PP_0026: PP_0026 - putative cobalt/cadmium/zinc exporter, at 30,431 to 31,336 _0026 PP_0027: PP_0027 - conserved membrane protein of unknown function, at 31,404 to 31,844 _0027 PP_0028: PP_0028 - conserved hypothetical protein, at 31,877 to 32,203 _0028 PP_5422: PP_5422 - hypothetical protein, at 32,402 to 32,575 _5422 Position (kb) 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.465 kb on + strandat 30.490 kb on - strandat 30.490 kb on - strandat 30.599 kb on - strand, within PP_0026at 30.599 kb on - strand, within PP_0026at 30.659 kb on - strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.834 kb on + strand, within PP_0026at 30.835 kb on - strand, within PP_0026at 30.835 kb on - strand, within PP_0026at 30.893 kb on + strand, within PP_0026at 30.893 kb on + strand, within PP_0026at 30.894 kb on - strand, within PP_0026at 30.894 kb on - strand, within PP_0026at 30.933 kb on + strand, within PP_0026at 30.934 kb on - strandat 30.949 kb on + strand, within PP_0026at 30.949 kb on + strand, within PP_0026at 30.949 kb on + strand, within PP_0026at 30.949 kb on + strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 31.119 kb on + strand, within PP_0026at 31.119 kb on + strand, within PP_0026at 31.120 kb on - strand, within PP_0026at 31.120 kb on - strand, within PP_0026at 31.174 kb on + strand, within PP_0026at 31.174 kb on + strand, within PP_0026at 31.175 kb on - strand, within PP_0026at 31.195 kb on - strand, within PP_0026at 31.195 kb on - strand, within PP_0026at 31.515 kb on + strand, within PP_0027at 31.515 kb on + strand, within PP_0027at 31.515 kb on + strand, within PP_0027at 31.516 kb on - strand, within PP_0027at 31.516 kb on - strand, within PP_0027at 31.516 kb on - strand, within PP_0027at 31.516 kb on - strand, within PP_0027at 31.519 kb on + strand, within PP_0027at 31.519 kb on + strand, within PP_0027at 31.519 kb on + strand, within PP_0027at 31.519 kb on + strand, within PP_0027at 31.520 kb on - strand, within PP_0027at 31.534 kb on + strand, within PP_0027at 31.535 kb on - strand, within PP_0027at 31.633 kb on - strand, within PP_0027at 31.636 kb on + strand, within PP_0027at 31.677 kb on + strand, within PP_0027at 31.677 kb on + strand, within PP_0027at 31.678 kb on - strand, within PP_0027at 31.678 kb on - strand, within PP_0027at 31.689 kb on + strand, within PP_0027at 31.690 kb on - strand, within PP_0027at 31.715 kb on + strand, within PP_0027at 31.716 kb on - strand, within PP_0027at 31.716 kb on - strand, within PP_0027at 31.735 kb on + strand, within PP_0027at 31.735 kb on + strand, within PP_0027at 31.736 kb on - strand, within PP_0027at 31.739 kb on + strand, within PP_0027at 31.739 kb on + strand, within PP_0027at 31.739 kb on + strand, within PP_0027at 31.740 kb on - strand, within PP_0027at 31.740 kb on - strand, within PP_0027at 31.810 kb on + strandat 31.810 kb on + strandat 31.811 kb on - strandat 31.840 kb on + strandat 31.840 kb on + strandat 31.841 kb on - strandat 31.886 kb on - strandat 31.888 kb on + strandat 31.889 kb on - strandat 31.889 kb on - strandat 31.947 kb on + strand, within PP_0028at 31.964 kb on + strand, within PP_0028at 31.965 kb on - strand, within PP_0028at 31.965 kb on - strand, within PP_0028at 31.965 kb on - strand, within PP_0028at 31.965 kb on - strand, within PP_0028at 31.994 kb on + strand, within PP_0028at 31.994 kb on + strand, within PP_0028at 31.994 kb on + strand, within PP_0028at 31.995 kb on - strand, within PP_0028at 31.995 kb on - strand, within PP_0028at 31.995 kb on - strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.999 kb on - strand, within PP_0028at 31.999 kb on - strand, within PP_0028at 31.999 kb on - strand, within PP_0028at 32.009 kb on - strand, within PP_0028at 32.038 kb on - strand, within PP_0028at 32.079 kb on + strand, within PP_0028at 32.098 kb on + strand, within PP_0028at 32.099 kb on - strand, within PP_0028at 32.104 kb on + strand, within PP_0028at 32.105 kb on - strand, within PP_0028at 32.119 kb on + strand, within PP_0028at 32.119 kb on + strandat 32.190 kb on - strandat 32.204 kb on - strandat 32.204 kb on - strandat 32.255 kb on - strandat 32.268 kb on - strandat 32.268 kb on - strandat 32.440 kb on + strand, within PP_5422at 32.445 kb on + strand, within PP_5422at 32.556 kb on + strand, within PP_5422at 32.557 kb on - strand, within PP_5422at 32.573 kb on + strandat 32.573 kb on + strandat 32.574 kb on - strandat 32.629 kb on + strandat 32.629 kb on + strandat 32.630 kb on - strandat 32.630 kb on - strandat 32.701 kb on + strandat 32.702 kb on - strandat 32.844 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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30,428 + -1.8
30,428 + +0.5
30,428 + -0.3
30,428 + +0.7
30,428 + +0.9
30,428 + +0.3
30,429 - +1.3
30,429 - -2.2
30,429 - +0.8
30,429 - +0.4
30,429 - -0.1
30,465 + -1.0
30,490 - +1.2
30,490 - +0.3
30,599 - PP_0026 0.19 -1.8
30,599 - PP_0026 0.19 +1.2
30,659 - PP_0026 0.25 +1.6
30,737 + PP_0026 0.34 +0.7
30,737 + PP_0026 0.34 -0.1
30,737 + PP_0026 0.34 +1.3
30,737 + PP_0026 0.34 +0.6
30,738 - PP_0026 0.34 +0.3
30,738 - PP_0026 0.34 +0.3
30,738 - PP_0026 0.34 +0.1
30,738 - PP_0026 0.34 +0.8
30,738 - PP_0026 0.34 -2.4
30,738 - PP_0026 0.34 -1.4
30,738 - PP_0026 0.34 -1.3
30,746 + PP_0026 0.35 +0.1
30,746 + PP_0026 0.35 +0.5
30,746 + PP_0026 0.35 +0.3
30,746 + PP_0026 0.35 -2.0
30,747 - PP_0026 0.35 -2.3
30,747 - PP_0026 0.35 +0.7
30,747 - PP_0026 0.35 -0.6
30,747 - PP_0026 0.35 +2.0
30,747 - PP_0026 0.35 -2.0
30,747 - PP_0026 0.35 -0.9
30,747 - PP_0026 0.35 +0.6
30,747 - PP_0026 0.35 +0.1
30,747 - PP_0026 0.35 -0.8
30,834 + PP_0026 0.44 -1.7
30,835 - PP_0026 0.45 -2.2
30,835 - PP_0026 0.45 +0.5
30,893 + PP_0026 0.51 -0.2
30,893 + PP_0026 0.51 -3.3
30,894 - PP_0026 0.51 -0.1
30,894 - PP_0026 0.51 +0.5
30,933 + PP_0026 0.55 -0.1
30,934 - -0.5
30,949 + PP_0026 0.57 +0.3
30,949 + PP_0026 0.57 -0.6
30,949 + PP_0026 0.57 -0.4
30,949 + PP_0026 0.57 -1.0
30,950 - PP_0026 0.57 +2.5
30,950 - PP_0026 0.57 -1.0
30,950 - PP_0026 0.57 +0.7
30,950 - PP_0026 0.57 +0.4
30,950 - PP_0026 0.57 +0.5
30,950 - PP_0026 0.57 -1.0
30,950 - PP_0026 0.57 +0.1
30,950 - PP_0026 0.57 +0.7
31,119 + PP_0026 0.76 +0.7
31,119 + PP_0026 0.76 -0.7
31,120 - PP_0026 0.76 -0.6
31,120 - PP_0026 0.76 -0.1
31,174 + PP_0026 0.82 -0.6
31,174 + PP_0026 0.82 +1.1
31,175 - PP_0026 0.82 +0.8
31,195 - PP_0026 0.84 -0.1
31,195 - PP_0026 0.84 -0.2
31,515 + PP_0027 0.25 +2.1
31,515 + PP_0027 0.25 +0.2
31,515 + PP_0027 0.25 +0.7
31,516 - PP_0027 0.25 +0.9
31,516 - PP_0027 0.25 -2.2
31,516 - PP_0027 0.25 +0.8
31,516 - PP_0027 0.25 +0.5
31,519 + PP_0027 0.26 +0.5
31,519 + PP_0027 0.26 +0.0
31,519 + PP_0027 0.26 +0.5
31,519 + PP_0027 0.26 -0.9
31,520 - PP_0027 0.26 +0.1
31,534 + PP_0027 0.29 -0.2
31,535 - PP_0027 0.30 +0.0
31,633 - PP_0027 0.52 -2.6
31,636 + PP_0027 0.53 +0.5
31,677 + PP_0027 0.62 +0.8
31,677 + PP_0027 0.62 +0.4
31,678 - PP_0027 0.62 +2.2
31,678 - PP_0027 0.62 -0.4
31,689 + PP_0027 0.65 +2.4
31,690 - PP_0027 0.65 -0.4
31,715 + PP_0027 0.71 +0.3
31,716 - PP_0027 0.71 -0.2
31,716 - PP_0027 0.71 +0.4
31,735 + PP_0027 0.75 -0.5
31,735 + PP_0027 0.75 +0.3
31,736 - PP_0027 0.75 -1.1
31,739 + PP_0027 0.76 +1.1
31,739 + PP_0027 0.76 -1.6
31,739 + PP_0027 0.76 +0.8
31,740 - PP_0027 0.76 +2.2
31,740 - PP_0027 0.76 -1.7
31,810 + -0.6
31,810 + -2.8
31,811 - -1.2
31,840 + -0.2
31,840 + -1.0
31,841 - -0.2
31,886 - +0.8
31,888 + -1.5
31,889 - -0.4
31,889 - +0.7
31,947 + PP_0028 0.21 +0.7
31,964 + PP_0028 0.27 -0.4
31,965 - PP_0028 0.27 -2.8
31,965 - PP_0028 0.27 +0.4
31,965 - PP_0028 0.27 -0.8
31,965 - PP_0028 0.27 -1.6
31,994 + PP_0028 0.36 -0.2
31,994 + PP_0028 0.36 +0.4
31,994 + PP_0028 0.36 -3.2
31,995 - PP_0028 0.36 -2.0
31,995 - PP_0028 0.36 -0.9
31,995 - PP_0028 0.36 +0.5
31,998 + PP_0028 0.37 -1.6
31,998 + PP_0028 0.37 +0.4
31,998 + PP_0028 0.37 -2.0
31,998 + PP_0028 0.37 +0.0
31,998 + PP_0028 0.37 -0.2
31,998 + PP_0028 0.37 +0.5
31,999 - PP_0028 0.37 +0.9
31,999 - PP_0028 0.37 -0.8
31,999 - PP_0028 0.37 -0.5
32,009 - PP_0028 0.40 -1.5
32,038 - PP_0028 0.49 +0.9
32,079 + PP_0028 0.62 +0.2
32,098 + PP_0028 0.68 -0.1
32,099 - PP_0028 0.68 -0.3
32,104 + PP_0028 0.69 -0.9
32,105 - PP_0028 0.70 -1.4
32,119 + PP_0028 0.74 +0.3
32,119 + -0.4
32,190 - -0.5
32,204 - -0.2
32,204 - -2.1
32,255 - -1.2
32,268 - +0.9
32,268 - +0.1
32,440 + PP_5422 0.22 +1.6
32,445 + PP_5422 0.25 +0.5
32,556 + PP_5422 0.89 +0.4
32,557 - PP_5422 0.89 +0.4
32,573 + +0.4
32,573 + -0.3
32,574 - +0.2
32,629 + +0.8
32,629 + +0.2
32,630 - -0.9
32,630 - -0.4
32,701 + +0.1
32,702 - +0.8
32,844 + +1.6

Or see this region's nucleotide sequence