Strain Fitness in Pseudomonas putida KT2440 around PP_4376

Experiment: Parafilmed volatile agar plate with no fungus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with no fungus
4,965,363	-				+1.7
4,965,363	-				+0.5
4,965,363	-				+2.7
4,965,363	-				+1.9
4,965,466	+				+1.7
4,965,466	+				+1.9
4,965,466	+				+1.5
4,965,466	+				+2.2
4,965,467	-				-0.2
4,965,481	-				-0.4
4,965,544	+				+1.6
4,965,544	+				+0.9
4,965,544	+				+1.8
4,965,544	+				+1.2
4,965,544	+				+1.0
4,965,545	-				+0.9
4,965,545	-				+0.9
4,965,545	-				-0.1
4,965,545	-				+2.6
4,965,546	+				+2.1
4,965,546	+				+2.0
4,965,547	-				+1.0
4,965,547	-				+1.3
4,965,547	-				+1.3
4,965,575	+		PP_4374	0.16	+1.8
4,965,703	-		PP_4374	0.60	+1.3
4,965,832	+				+1.4
4,965,833	+				+2.0
4,965,834	-				+0.3
4,965,838	+				+1.9
4,965,841	+				+1.0
4,965,841	+				+2.2
4,965,841	+				+2.2
4,965,841	+				+1.9
4,965,841	+				+1.2
4,965,842	-				+0.0
4,965,927	-		PP_4375	0.22	+0.1
4,965,961	+		PP_4375	0.31	-0.0
4,965,961	+		PP_4375	0.31	+2.5
4,965,961	+		PP_4375	0.31	+1.5
4,965,961	+		PP_4375	0.31	+2.8
4,965,961	+		PP_4375	0.31	-0.4
4,965,962	-		PP_4375	0.31	+0.2
4,965,962	-		PP_4375	0.31	+2.4
4,965,962	-		PP_4375	0.31	+0.6
4,965,967	+		PP_4375	0.32	-0.4
4,965,967	+		PP_4375	0.32	+2.0
4,966,041	+		PP_4375	0.51	+1.3
4,966,041	+		PP_4375	0.51	+0.3
4,966,041	+		PP_4375	0.51	+2.7
4,966,041	+		PP_4375	0.51	+1.4
4,966,041	+		PP_4375	0.51	+2.1
4,966,041	+		PP_4375	0.51	+1.0
4,966,041	+		PP_4375	0.51	-0.4
4,966,041	+		PP_4375	0.51	+0.7
4,966,042	-		PP_4375	0.51	+1.6
4,966,042	-		PP_4375	0.51	+0.1
4,966,042	-		PP_4375	0.51	-1.1
4,966,042	-		PP_4375	0.51	+0.6
4,966,042	-		PP_4375	0.51	+0.9
4,966,042	-		PP_4375	0.51	+1.4
4,966,042	-		PP_4375	0.51	-0.1
4,966,042	-		PP_4375	0.51	+0.4
4,966,043	+		PP_4375	0.51	-1.3
4,966,043	+		PP_4375	0.51	-1.3
4,966,044	-		PP_4375	0.52	+0.7
4,966,044	-		PP_4375	0.52	+1.6
4,966,044	-		PP_4375	0.52	-1.9
4,966,044	-		PP_4375	0.52	+0.5
4,966,044	-		PP_4375	0.52	+1.7
4,966,068	+		PP_4375	0.58	+0.9
4,966,068	+		PP_4375	0.58	+0.4
4,966,068	+		PP_4375	0.58	+0.9
4,966,068	+		PP_4375	0.58	-1.4
4,966,068	+		PP_4375	0.58	+1.6
4,966,069	-		PP_4375	0.58	+3.1
4,966,069	-		PP_4375	0.58	-0.7
4,966,069	-		PP_4375	0.58	+0.7
4,966,260	-				+0.9
4,966,270	+				+2.3
4,966,270	+				+1.9
4,966,270	+				-1.5
4,966,270	+				+0.5
4,966,270	+				-0.9
4,966,270	+				+2.3
4,966,274	+				+0.5
4,966,274	+				+2.2
4,966,274	+				+0.2
4,966,274	+				+4.8
4,966,275	-				+0.8
4,966,275	-				+0.9
4,966,278	+				+0.7
4,966,278	+				+0.7
4,966,278	+				-1.5
4,966,278	+				+2.3
4,966,278	+				-0.6
4,966,278	+				+0.5
4,966,279	-				-0.1
4,966,279	-				+1.1
4,966,279	-				-0.6
4,966,311	-				-0.2
4,966,311	-				+0.7
4,966,415	+				+2.0
4,966,415	+				+1.0
4,966,415	+				+1.5
4,966,416	-				+1.2
4,966,416	-				-0.9
4,966,449	+				+1.6
4,966,449	+				+0.6
4,966,450	-				+1.5
4,966,487	+		PP_4376	0.12	+1.4
4,966,489	+		PP_4376	0.13	+1.0
4,966,489	+		PP_4376	0.13	+1.3
4,966,544	+		PP_4376	0.17	+1.7
4,966,544	+		PP_4376	0.17	+1.2
4,966,544	+		PP_4376	0.17	+1.9
4,966,545	-		PP_4376	0.17	+1.0
4,966,545	-		PP_4376	0.17	+1.6
4,966,545	-		PP_4376	0.17	+0.9
4,966,545	-		PP_4376	0.17	+1.9
4,966,683	+		PP_4376	0.27	+2.2
4,966,806	+		PP_4376	0.36	+2.0
4,966,807	-		PP_4376	0.36	-0.1
4,966,807	-		PP_4376	0.36	+2.3
4,966,871	+		PP_4376	0.41	+1.4
4,966,872	-		PP_4376	0.41	+0.7
4,966,872	-		PP_4376	0.41	+0.8
4,966,872	-		PP_4376	0.41	+1.8
4,966,908	+		PP_4376	0.43	+1.4
4,966,909	-		PP_4376	0.43	-0.3
4,966,909	-		PP_4376	0.43	+1.7
4,966,914	+		PP_4376	0.44	+2.5
4,966,915	-		PP_4376	0.44	+1.8
4,966,915	-		PP_4376	0.44	+0.5
4,966,915	-		PP_4376	0.44	+0.8
4,966,915	-		PP_4376	0.44	+1.0
4,966,942	-		PP_4376	0.46	+1.2
4,966,942	-		PP_4376	0.46	+2.5
4,966,951	+		PP_4376	0.47	+1.7
4,966,951	+		PP_4376	0.47	+1.7
4,966,952	-		PP_4376	0.47	+2.1
4,966,992	+		PP_4376	0.50	+1.6
4,966,993	-		PP_4376	0.50	+0.4
4,966,993	-		PP_4376	0.50	+1.0
4,966,993	-		PP_4376	0.50	+1.8
4,966,995	+				+2.3
4,966,996	-		PP_4376	0.50	+1.1
4,966,996	-		PP_4376	0.50	+0.8
4,967,030	+		PP_4376	0.52	+0.5
4,967,098	-		PP_4376	0.57	+1.5
4,967,134	+		PP_4376	0.60	+1.9
4,967,134	+		PP_4376	0.60	+1.8
4,967,199	+		PP_4376	0.65	+0.9
4,967,255	+		PP_4376	0.69	+0.2
4,967,256	-		PP_4376	0.69	+1.2
4,967,301	+		PP_4376	0.72	-0.5
4,967,301	+		PP_4376	0.72	+2.1
4,967,302	-		PP_4376	0.72	+0.1
4,967,309	-		PP_4376	0.73	+0.2
4,967,387	+		PP_4376	0.79	-1.0
4,967,392	-		PP_4376	0.79	+1.7
4,967,478	+		PP_4376	0.85	+1.7
4,967,478	+		PP_4376	0.85	+1.1
4,967,478	+		PP_4376	0.85	+0.8
4,967,479	-		PP_4376	0.85	-0.5
4,967,479	-		PP_4376	0.85	+2.6
4,967,479	-		PP_4376	0.85	+2.4
4,967,479	-		PP_4376	0.85	+2.0
4,967,479	-		PP_4376	0.85	+1.3
4,967,509	-		PP_4376	0.88	+0.5
4,967,523	+		PP_4376	0.89	+2.2
4,967,523	+		PP_4376	0.89	+1.5
4,967,523	+		PP_4376	0.89	+1.6
4,967,524	-		PP_4376	0.89	+0.4
4,967,524	-		PP_4376	0.89	+2.2
4,967,524	-		PP_4376	0.89	+1.9
4,967,556	+				+1.2
4,967,556	+				+3.3
4,967,556	+				-0.5
4,967,556	+				+1.5
4,967,557	-				+0.1
4,967,571	+				-0.7
4,967,653	-				+1.0
4,967,667	+				+1.8
4,967,682	+				+1.8
4,967,682	+				+2.1
4,967,683	-				-1.4
4,967,683	-				+2.4
4,967,683	-				+1.2
4,967,683	-				+1.0
4,967,683	-				+1.6
4,967,683	-				+2.2
4,967,685	-				+0.4
4,967,685	-				+1.3
4,967,685	-				-0.6
4,967,761	+				+0.6
4,967,762	-				-0.6
4,967,778	+				+1.0
4,967,938	-		PP_4377	0.52	+0.4
4,967,938	-		PP_4377	0.52	-0.1
4,967,941	+		PP_4377	0.52	+0.2
4,967,941	+		PP_4377	0.52	+2.1
4,967,941	+		PP_4377	0.52	-1.2
4,967,942	-		PP_4377	0.53	+1.3
4,967,949	+		PP_4377	0.55	+1.1
4,967,950	-		PP_4377	0.55	-0.9
4,967,950	-		PP_4377	0.55	-0.2
4,968,009	+		PP_4377	0.72	+0.4
4,968,098	+				-0.2
4,968,099	-				-0.5
4,968,099	-				-0.6
4,968,099	-				+2.8
4,968,099	-				-0.0
4,968,118	+				+1.3
4,968,140	-				+0.8
4,968,140	-				-0.2
4,968,140	-				+1.4
4,968,308	-				+1.2
4,968,314	-				+0.7
4,968,491	-		PP_4378	0.15	+1.5
4,968,491	-		PP_4378	0.15	+2.0
4,968,491	-		PP_4378	0.15	+0.7