Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5453 and PP_0652 are separated by 64 nucleotides PP_0652 and PP_0653 overlap by 4 nucleotides PP_0653 and PP_0654 are separated by 151 nucleotides
PP_5453: PP_5453 - conserved protein of unknown function, at 759,862 to 760,089
_5453
PP_0652: PP_0652 - Gluconate transporter, at 760,154 to 761,539
_0652
PP_0653: PP_0653 - conserved protein of unknown function, at 761,536 to 761,817
_0653
PP_0654: PP_0654 - putative malate dehydrogenase, at 761,969 to 762,901
_0654
Position (kb) 760
761
762 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 759.202 kb on + strand at 759.226 kb on + strand at 759.276 kb on + strand at 759.277 kb on - strand at 759.288 kb on + strand at 759.288 kb on + strand at 759.288 kb on + strand at 759.289 kb on - strand at 759.294 kb on + strand at 759.294 kb on + strand at 759.295 kb on - strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.311 kb on - strand at 759.313 kb on + strand at 759.313 kb on + strand at 759.374 kb on + strand at 759.375 kb on - strand at 759.375 kb on - strand at 759.396 kb on + strand at 759.419 kb on + strand at 759.434 kb on - strand at 759.607 kb on + strand at 759.608 kb on - strand at 759.608 kb on - strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.760 kb on - strand at 759.810 kb on + strand at 759.811 kb on - strand at 759.811 kb on - strand at 760.055 kb on + strand, within PP_5453 at 760.056 kb on - strand, within PP_5453 at 760.056 kb on - strand, within PP_5453 at 760.087 kb on + strand at 760.088 kb on - strand at 760.088 kb on - strand at 760.088 kb on - strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.306 kb on - strand, within PP_0652 at 760.407 kb on - strand, within PP_0652 at 760.433 kb on - strand, within PP_0652 at 760.433 kb on - strand, within PP_0652 at 760.520 kb on + strand, within PP_0652 at 760.521 kb on - strand, within PP_0652 at 760.920 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.969 kb on - strand, within PP_0652 at 761.037 kb on - strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.091 kb on + strand, within PP_0652 at 761.092 kb on - strand, within PP_0652 at 761.145 kb on - strand, within PP_0652 at 761.398 kb on + strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.513 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.645 kb on - strand, within PP_0653 at 761.809 kb on + strand at 761.821 kb on + strand at 761.838 kb on + strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.926 kb on - strand at 761.926 kb on - strand at 761.926 kb on - strand at 761.928 kb on - strand at 761.928 kb on - strand at 761.928 kb on - strand at 761.944 kb on - strand at 761.944 kb on - strand at 762.140 kb on - strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.250 kb on + strand, within PP_0654 at 762.250 kb on + strand, within PP_0654 at 762.251 kb on - strand, within PP_0654 at 762.251 kb on - strand, within PP_0654 at 762.350 kb on + strand, within PP_0654 at 762.351 kb on - strand, within PP_0654 at 762.469 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 759,202 + -0.2 759,226 + -0.4 759,276 + +0.0 759,277 - -0.7 759,288 + -1.4 759,288 + +0.4 759,288 + +0.1 759,289 - +0.6 759,294 + +1.4 759,294 + +1.1 759,295 - +0.5 759,310 + +0.1 759,310 + +1.1 759,310 + -0.9 759,310 + +0.0 759,311 - +1.3 759,313 + -1.3 759,313 + +1.3 759,374 + -0.4 759,375 - +0.3 759,375 - +0.7 759,396 + -1.2 759,419 + -0.6 759,434 - -0.5 759,607 + +0.5 759,608 - -0.2 759,608 - +0.3 759,675 + +1.7 759,675 + +2.7 759,675 + +2.5 759,675 + +2.6 759,676 - -1.1 759,676 - +0.1 759,676 - +0.0 759,676 - -0.1 759,676 - -1.0 759,676 - -0.5 759,760 - +0.1 759,810 + -1.1 759,811 - -0.0 759,811 - -1.6 760,055 + PP_5453 0.85 -1.5 760,056 - PP_5453 0.85 +0.7 760,056 - PP_5453 0.85 +1.8 760,087 + +0.4 760,088 - -0.3 760,088 - +0.0 760,088 - +1.3 760,160 + -1.1 760,160 + +0.3 760,160 + -0.3 760,160 + +1.0 760,160 + +0.2 760,160 + +0.2 760,161 - -1.6 760,161 - -0.6 760,161 - -0.0 760,161 - -1.4 760,161 - -0.1 760,305 + PP_0652 0.11 +1.0 760,305 + PP_0652 0.11 -1.0 760,305 + PP_0652 0.11 -0.3 760,305 + PP_0652 0.11 +0.7 760,305 + PP_0652 0.11 +1.5 760,306 - PP_0652 0.11 +0.5 760,407 - PP_0652 0.18 +1.9 760,433 - PP_0652 0.20 -1.8 760,433 - PP_0652 0.20 +1.0 760,520 + PP_0652 0.26 -1.8 760,521 - PP_0652 0.26 +0.7 760,920 + PP_0652 0.55 -0.2 760,968 + PP_0652 0.59 -2.1 760,968 + PP_0652 0.59 +0.3 760,968 + PP_0652 0.59 -1.9 760,969 - PP_0652 0.59 +0.8 761,037 - PP_0652 0.64 -1.1 761,081 + PP_0652 0.67 -0.6 761,081 + PP_0652 0.67 -0.9 761,081 + PP_0652 0.67 +0.8 761,081 + PP_0652 0.67 +0.0 761,081 + PP_0652 0.67 +1.6 761,081 + PP_0652 0.67 +0.2 761,081 + PP_0652 0.67 -0.8 761,082 - PP_0652 0.67 -0.2 761,082 - PP_0652 0.67 +0.4 761,082 - PP_0652 0.67 -0.7 761,085 + PP_0652 0.67 +0.9 761,085 + PP_0652 0.67 +0.0 761,085 + PP_0652 0.67 +2.1 761,085 + PP_0652 0.67 +1.1 761,085 + PP_0652 0.67 +0.7 761,085 + PP_0652 0.67 +1.1 761,085 + PP_0652 0.67 +0.4 761,085 + PP_0652 0.67 +0.4 761,085 + PP_0652 0.67 -0.2 761,085 + PP_0652 0.67 +0.1 761,085 + PP_0652 0.67 +0.5 761,085 + PP_0652 0.67 +0.3 761,086 - PP_0652 0.67 +0.2 761,086 - PP_0652 0.67 +1.2 761,086 - PP_0652 0.67 +2.0 761,086 - PP_0652 0.67 -0.4 761,086 - PP_0652 0.67 -1.2 761,086 - PP_0652 0.67 +0.2 761,086 - PP_0652 0.67 +2.0 761,086 - PP_0652 0.67 +0.3 761,086 - PP_0652 0.67 -0.8 761,086 - PP_0652 0.67 +0.3 761,091 + PP_0652 0.68 -0.1 761,092 - PP_0652 0.68 +1.1 761,145 - PP_0652 0.72 -1.4 761,398 + PP_0652 0.90 -0.4 761,399 - PP_0652 0.90 +0.3 761,399 - PP_0652 0.90 +0.1 761,399 - PP_0652 0.90 +0.5 761,513 + -0.1 761,516 + -1.7 761,516 + +0.1 761,516 + +0.4 761,516 + -0.3 761,516 + +1.1 761,516 + +0.8 761,516 + +0.3 761,517 - -2.7 761,517 - -0.2 761,517 - +2.2 761,517 - -1.2 761,517 - -0.6 761,522 + +1.4 761,522 + -0.2 761,522 + +0.7 761,522 + -1.2 761,522 + +0.6 761,522 + +0.8 761,522 + -0.3 761,522 + -0.6 761,522 + -0.8 761,522 + -1.1 761,522 + -1.3 761,522 + -1.3 761,522 + -0.3 761,523 - -1.2 761,523 - -0.3 761,523 - -0.3 761,523 - -1.0 761,523 - +2.2 761,523 - +0.8 761,523 - +0.3 761,523 - -0.3 761,523 - -0.8 761,523 - +0.1 761,523 - +0.3 761,523 - -0.5 761,523 - -1.4 761,523 - -0.1 761,524 + +1.4 761,524 + +0.1 761,524 + -1.4 761,524 + -2.4 761,525 - +0.4 761,525 - -0.6 761,525 - +0.3 761,525 - +0.4 761,525 - -0.7 761,525 - +0.0 761,528 + +0.3 761,528 + -2.1 761,528 + -0.7 761,528 + -0.1 761,528 + +0.4 761,528 + -0.4 761,528 + +0.8 761,529 - -0.0 761,529 - -0.5 761,529 - +0.0 761,529 - +0.5 761,529 - +1.1 761,645 - PP_0653 0.39 +0.4 761,809 + -1.4 761,821 + -1.5 761,838 + +0.2 761,916 - -0.6 761,916 - -0.6 761,916 - +1.5 761,916 - +1.9 761,916 - -0.6 761,916 - +0.2 761,926 - +0.3 761,926 - -1.1 761,926 - -1.7 761,928 - +0.4 761,928 - -0.9 761,928 - -0.1 761,944 - -0.3 761,944 - -1.2 762,140 - PP_0654 0.18 -1.8 762,243 + PP_0654 0.29 +0.5 762,243 + PP_0654 0.29 -2.4 762,243 + PP_0654 0.29 -1.4 762,243 + PP_0654 0.29 +0.9 762,243 + PP_0654 0.29 -1.8 762,244 - PP_0654 0.29 -0.2 762,244 - PP_0654 0.29 -0.5 762,244 - PP_0654 0.29 +4.3 762,244 - PP_0654 0.29 -0.7 762,244 - PP_0654 0.29 -0.2 762,244 - PP_0654 0.29 -0.5 762,244 - PP_0654 0.29 -0.6 762,250 + PP_0654 0.30 +0.9 762,250 + PP_0654 0.30 -0.4 762,251 - PP_0654 0.30 -0.0 762,251 - PP_0654 0.30 +0.0 762,350 + PP_0654 0.41 -0.1 762,351 - PP_0654 0.41 -0.1 762,469 + PP_0654 0.54 -0.4 762,524 + PP_0654 0.59 -0.3 762,524 + PP_0654 0.59 -0.3 762,524 + PP_0654 0.59 +0.7
Or see this region's nucleotide sequence