Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3801 and PP_3802 overlap by 4 nucleotides PP_3802 and PP_3803 overlap by 1 nucleotides PP_3803 and PP_3804 overlap by 4 nucleotides PP_3804 and PP_3805 are separated by 83 nucleotides
PP_3801: PP_3801 - putative Cation ABC transporter, periplasmic cation-binding protein, at 4,329,656 to 4,330,558
_3801
PP_3802: PP_3802 - putative Cation ABC transporter, ATP-binding protein, at 4,330,555 to 4,331,301
_3802
PP_3803: PP_3803 - putative Cation ABC transporter, permease protein, at 4,331,301 to 4,332,200
_3803
PP_3804: PP_3804 - conserved exported protein of unknown function, at 4,332,197 to 4,333,060
_3804
PP_3805: PP_3805 - lipoprotein required for swarming, at 4,333,144 to 4,334,196
_3805
Position (kb) 4331
4332
4333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4330.409 kb on + strand, within PP_3801 at 4330.410 kb on - strand, within PP_3801 at 4330.462 kb on + strand, within PP_3801 at 4330.462 kb on + strand, within PP_3801 at 4330.462 kb on + strand, within PP_3801 at 4330.463 kb on - strand, within PP_3801 at 4330.463 kb on - strand, within PP_3801 at 4330.463 kb on - strand, within PP_3801 at 4330.478 kb on + strand at 4330.479 kb on - strand at 4330.493 kb on + strand at 4330.493 kb on + strand at 4330.493 kb on + strand at 4330.494 kb on - strand at 4330.494 kb on - strand at 4330.494 kb on - strand at 4330.801 kb on + strand, within PP_3802 at 4330.801 kb on + strand, within PP_3802 at 4330.802 kb on - strand, within PP_3802 at 4331.105 kb on + strand, within PP_3802 at 4331.105 kb on + strand, within PP_3802 at 4331.106 kb on - strand, within PP_3802 at 4331.106 kb on - strand, within PP_3802 at 4331.133 kb on + strand, within PP_3802 at 4331.352 kb on + strand at 4331.352 kb on + strand at 4331.353 kb on - strand at 4331.353 kb on - strand at 4331.373 kb on + strand at 4331.373 kb on + strand at 4331.374 kb on - strand at 4331.374 kb on - strand at 4331.535 kb on + strand, within PP_3803 at 4331.535 kb on + strand, within PP_3803 at 4331.535 kb on + strand, within PP_3803 at 4331.535 kb on + strand, within PP_3803 at 4331.535 kb on + strand at 4331.538 kb on - strand, within PP_3803 at 4331.538 kb on - strand, within PP_3803 at 4331.610 kb on - strand, within PP_3803 at 4331.627 kb on + strand, within PP_3803 at 4331.750 kb on + strand, within PP_3803 at 4331.817 kb on + strand, within PP_3803 at 4331.818 kb on - strand, within PP_3803 at 4331.892 kb on + strand, within PP_3803 at 4331.893 kb on - strand, within PP_3803 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.579 kb on - strand, within PP_3804 at 4332.579 kb on - strand, within PP_3804 at 4332.588 kb on - strand, within PP_3804 at 4332.588 kb on - strand, within PP_3804 at 4332.794 kb on + strand, within PP_3804 at 4333.017 kb on + strand at 4333.017 kb on + strand at 4333.017 kb on + strand at 4333.018 kb on - strand at 4333.166 kb on + strand at 4333.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,330,409 + PP_3801 0.83 -0.2 4,330,410 - PP_3801 0.83 -2.2 4,330,462 + PP_3801 0.89 -1.0 4,330,462 + PP_3801 0.89 -0.6 4,330,462 + PP_3801 0.89 +0.1 4,330,463 - PP_3801 0.89 -0.3 4,330,463 - PP_3801 0.89 -1.2 4,330,463 - PP_3801 0.89 -1.7 4,330,478 + -1.0 4,330,479 - -0.9 4,330,493 + -2.2 4,330,493 + +0.1 4,330,493 + +0.5 4,330,494 - +0.1 4,330,494 - -0.9 4,330,494 - -1.0 4,330,801 + PP_3802 0.33 +0.0 4,330,801 + PP_3802 0.33 -2.5 4,330,802 - PP_3802 0.33 -0.3 4,331,105 + PP_3802 0.74 -1.3 4,331,105 + PP_3802 0.74 -1.0 4,331,106 - PP_3802 0.74 -1.2 4,331,106 - PP_3802 0.74 -0.3 4,331,133 + PP_3802 0.77 -0.3 4,331,352 + -1.7 4,331,352 + -2.9 4,331,353 - -0.3 4,331,353 - -0.7 4,331,373 + +0.6 4,331,373 + +1.0 4,331,374 - +2.6 4,331,374 - -1.1 4,331,535 + PP_3803 0.26 -1.0 4,331,535 + PP_3803 0.26 -0.8 4,331,535 + PP_3803 0.26 -1.0 4,331,535 + PP_3803 0.26 +0.4 4,331,535 + +0.3 4,331,538 - PP_3803 0.26 -1.1 4,331,538 - PP_3803 0.26 -0.8 4,331,610 - PP_3803 0.34 -0.6 4,331,627 + PP_3803 0.36 -0.6 4,331,750 + PP_3803 0.50 -0.1 4,331,817 + PP_3803 0.57 +0.4 4,331,818 - PP_3803 0.57 -3.3 4,331,892 + PP_3803 0.66 -2.2 4,331,893 - PP_3803 0.66 -0.3 4,332,578 + PP_3804 0.44 +0.1 4,332,578 + PP_3804 0.44 -0.6 4,332,578 + PP_3804 0.44 -1.5 4,332,578 + PP_3804 0.44 -1.1 4,332,578 + PP_3804 0.44 -0.1 4,332,578 + PP_3804 0.44 -0.3 4,332,578 + PP_3804 0.44 -1.8 4,332,579 - PP_3804 0.44 -1.8 4,332,579 - PP_3804 0.44 -0.6 4,332,588 - PP_3804 0.45 -1.0 4,332,588 - PP_3804 0.45 -1.2 4,332,794 + PP_3804 0.69 -1.3 4,333,017 + +1.0 4,333,017 + -0.9 4,333,017 + -0.7 4,333,018 - -0.5 4,333,166 + -1.1 4,333,167 - +0.4
Or see this region's nucleotide sequence