Strain Fitness in Pseudomonas putida KT2440 around PP_1711

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1710 and PP_1711 are separated by 295 nucleotidesPP_1711 and PP_1712 are separated by 25 nucleotides PP_1710: PP_1710 - MFS transporter, phthalate permease family, at 1,909,471 to 1,910,811 _1710 PP_1711: PP_1711 - Transcriptional regulator, AraC family, at 1,911,107 to 1,912,036 _1711 PP_1712: PP_1712 - conserved protein of unknown function, at 1,912,062 to 1,913,471 _1712 Position (kb) 1911 1912 1913Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1910.151 kb on - strand, within PP_1710at 1910.170 kb on + strand, within PP_1710at 1910.170 kb on + strand, within PP_1710at 1910.171 kb on - strand, within PP_1710at 1910.171 kb on - strand, within PP_1710at 1910.199 kb on - strand, within PP_1710at 1910.249 kb on + strand, within PP_1710at 1910.270 kb on + strand, within PP_1710at 1910.270 kb on + strand, within PP_1710at 1910.270 kb on + strand, within PP_1710at 1910.270 kb on + strand, within PP_1710at 1910.270 kb on + strand, within PP_1710at 1910.270 kb on + strand, within PP_1710at 1910.270 kb on + strand, within PP_1710at 1910.271 kb on - strand, within PP_1710at 1910.271 kb on - strand, within PP_1710at 1910.271 kb on - strand, within PP_1710at 1910.271 kb on - strand, within PP_1710at 1910.271 kb on - strand, within PP_1710at 1910.271 kb on - strand, within PP_1710at 1910.332 kb on + strand, within PP_1710at 1910.332 kb on + strand, within PP_1710at 1910.332 kb on + strandat 1910.332 kb on + strand, within PP_1710at 1910.332 kb on + strand, within PP_1710at 1910.332 kb on + strand, within PP_1710at 1910.333 kb on - strand, within PP_1710at 1910.333 kb on - strand, within PP_1710at 1910.336 kb on + strand, within PP_1710at 1910.336 kb on + strand, within PP_1710at 1910.336 kb on + strand, within PP_1710at 1910.336 kb on + strand, within PP_1710at 1910.336 kb on + strand, within PP_1710at 1910.336 kb on + strand, within PP_1710at 1910.336 kb on + strand, within PP_1710at 1910.337 kb on - strand, within PP_1710at 1910.337 kb on - strand, within PP_1710at 1910.337 kb on - strand, within PP_1710at 1910.337 kb on - strand, within PP_1710at 1910.337 kb on - strand, within PP_1710at 1910.337 kb on - strand, within PP_1710at 1910.337 kb on - strand, within PP_1710at 1910.337 kb on - strand, within PP_1710at 1910.337 kb on - strand, within PP_1710at 1910.378 kb on - strand, within PP_1710at 1910.519 kb on + strand, within PP_1710at 1910.520 kb on - strand, within PP_1710at 1910.520 kb on - strand, within PP_1710at 1910.520 kb on - strand, within PP_1710at 1910.580 kb on - strand, within PP_1710at 1910.580 kb on - strand, within PP_1710at 1910.580 kb on - strand, within PP_1710at 1910.580 kb on - strand, within PP_1710at 1910.580 kb on - strand, within PP_1710at 1910.684 kb on + strandat 1910.685 kb on - strandat 1910.685 kb on - strandat 1910.835 kb on - strandat 1910.835 kb on - strandat 1910.835 kb on - strandat 1910.835 kb on - strandat 1910.900 kb on - strandat 1910.903 kb on + strandat 1910.903 kb on + strandat 1910.903 kb on + strandat 1910.903 kb on + strandat 1910.904 kb on - strandat 1910.904 kb on - strandat 1910.979 kb on + strandat 1910.980 kb on - strandat 1911.134 kb on + strandat 1911.134 kb on + strandat 1911.134 kb on + strandat 1911.134 kb on + strandat 1911.135 kb on - strandat 1911.135 kb on - strandat 1911.135 kb on - strandat 1911.135 kb on - strandat 1911.135 kb on - strandat 1911.224 kb on + strand, within PP_1711at 1911.225 kb on - strand, within PP_1711at 1911.225 kb on - strand, within PP_1711at 1911.225 kb on - strand, within PP_1711at 1911.336 kb on + strand, within PP_1711at 1911.336 kb on + strand, within PP_1711at 1911.336 kb on + strand, within PP_1711at 1911.337 kb on - strand, within PP_1711at 1911.337 kb on - strand, within PP_1711at 1911.337 kb on - strand, within PP_1711at 1911.337 kb on - strand, within PP_1711at 1911.337 kb on - strand, within PP_1711at 1911.337 kb on - strand, within PP_1711at 1911.523 kb on - strand, within PP_1711at 1911.632 kb on + strand, within PP_1711at 1911.633 kb on - strand, within PP_1711at 1911.773 kb on + strand, within PP_1711at 1911.774 kb on - strand, within PP_1711at 1911.774 kb on - strand, within PP_1711at 1911.789 kb on - strand, within PP_1711at 1911.789 kb on - strand, within PP_1711at 1911.872 kb on + strand, within PP_1711at 1911.872 kb on + strand, within PP_1711at 1911.872 kb on + strand, within PP_1711at 1911.872 kb on + strand, within PP_1711at 1911.916 kb on - strand, within PP_1711at 1911.916 kb on - strand, within PP_1711at 1912.034 kb on + strandat 1912.035 kb on - strandat 1912.060 kb on + strandat 1912.060 kb on + strandat 1912.063 kb on + strandat 1912.063 kb on + strandat 1912.063 kb on + strandat 1912.064 kb on - strandat 1912.064 kb on - strandat 1912.119 kb on + strandat 1912.119 kb on + strandat 1912.120 kb on - strandat 1912.164 kb on + strandat 1912.184 kb on + strandat 1912.187 kb on - strandat 1912.239 kb on + strand, within PP_1712at 1912.318 kb on - strand, within PP_1712at 1912.340 kb on + strand, within PP_1712at 1912.341 kb on - strand, within PP_1712at 1912.374 kb on + strand, within PP_1712at 1912.414 kb on + strand, within PP_1712at 1912.415 kb on - strand, within PP_1712at 1912.415 kb on - strand, within PP_1712at 1912.415 kb on - strand, within PP_1712at 1912.415 kb on - strandat 1912.463 kb on - strand, within PP_1712at 1912.463 kb on - strand, within PP_1712at 1912.503 kb on + strand, within PP_1712at 1912.517 kb on + strand, within PP_1712at 1912.518 kb on - strand, within PP_1712at 1912.518 kb on - strand, within PP_1712at 1912.518 kb on - strand, within PP_1712at 1912.609 kb on + strand, within PP_1712at 1912.629 kb on + strandat 1912.630 kb on - strand, within PP_1712at 1912.630 kb on - strand, within PP_1712at 1912.630 kb on - strand, within PP_1712at 1912.630 kb on - strand, within PP_1712at 1912.634 kb on - strand, within PP_1712at 1912.634 kb on - strand, within PP_1712at 1912.769 kb on + strand, within PP_1712at 1912.769 kb on + strand, within PP_1712at 1912.770 kb on - strand, within PP_1712at 1912.770 kb on - strand, within PP_1712at 1912.770 kb on - strand, within PP_1712at 1912.770 kb on - strand, within PP_1712at 1912.907 kb on + strand, within PP_1712at 1912.908 kb on - strand, within PP_1712at 1912.909 kb on + strand, within PP_1712at 1912.909 kb on + strand, within PP_1712at 1912.909 kb on + strand, within PP_1712at 1912.909 kb on + strand, within PP_1712at 1912.909 kb on + strand, within PP_1712at 1912.976 kb on + strand, within PP_1712at 1913.031 kb on + strand, within PP_1712at 1913.032 kb on - strand, within PP_1712at 1913.032 kb on - strand, within PP_1712

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,910,151 - PP_1710 0.51 +0.4
1,910,170 + PP_1710 0.52 +1.1
1,910,170 + PP_1710 0.52 -2.5
1,910,171 - PP_1710 0.52 -0.1
1,910,171 - PP_1710 0.52 +0.4
1,910,199 - PP_1710 0.54 +0.2
1,910,249 + PP_1710 0.58 -0.1
1,910,270 + PP_1710 0.60 +0.9
1,910,270 + PP_1710 0.60 -2.5
1,910,270 + PP_1710 0.60 +0.4
1,910,270 + PP_1710 0.60 -1.7
1,910,270 + PP_1710 0.60 -0.7
1,910,270 + PP_1710 0.60 +0.5
1,910,270 + PP_1710 0.60 -1.5
1,910,271 - PP_1710 0.60 +1.8
1,910,271 - PP_1710 0.60 +0.3
1,910,271 - PP_1710 0.60 +0.5
1,910,271 - PP_1710 0.60 +0.1
1,910,271 - PP_1710 0.60 -1.1
1,910,271 - PP_1710 0.60 +0.9
1,910,332 + PP_1710 0.64 -0.9
1,910,332 + PP_1710 0.64 -1.4
1,910,332 + +2.7
1,910,332 + PP_1710 0.64 -0.4
1,910,332 + PP_1710 0.64 +1.0
1,910,332 + PP_1710 0.64 +1.3
1,910,333 - PP_1710 0.64 -0.2
1,910,333 - PP_1710 0.64 -1.4
1,910,336 + PP_1710 0.65 +0.7
1,910,336 + PP_1710 0.65 +1.8
1,910,336 + PP_1710 0.65 +0.4
1,910,336 + PP_1710 0.65 -2.6
1,910,336 + PP_1710 0.65 -0.4
1,910,336 + PP_1710 0.65 -1.9
1,910,336 + PP_1710 0.65 +0.3
1,910,337 - PP_1710 0.65 +0.1
1,910,337 - PP_1710 0.65 -0.9
1,910,337 - PP_1710 0.65 +0.1
1,910,337 - PP_1710 0.65 +0.3
1,910,337 - PP_1710 0.65 -0.8
1,910,337 - PP_1710 0.65 -1.0
1,910,337 - PP_1710 0.65 +0.4
1,910,337 - PP_1710 0.65 +0.9
1,910,337 - PP_1710 0.65 +0.7
1,910,378 - PP_1710 0.68 +0.7
1,910,519 + PP_1710 0.78 +1.2
1,910,520 - PP_1710 0.78 +0.3
1,910,520 - PP_1710 0.78 +1.2
1,910,520 - PP_1710 0.78 -0.5
1,910,580 - PP_1710 0.83 +0.4
1,910,580 - PP_1710 0.83 -1.6
1,910,580 - PP_1710 0.83 -0.9
1,910,580 - PP_1710 0.83 -0.9
1,910,580 - PP_1710 0.83 +0.7
1,910,684 + -0.3
1,910,685 - +0.4
1,910,685 - +0.6
1,910,835 - +1.4
1,910,835 - +0.7
1,910,835 - -0.5
1,910,835 - -0.4
1,910,900 - -1.2
1,910,903 + +0.7
1,910,903 + +1.3
1,910,903 + +0.5
1,910,903 + +0.5
1,910,904 - -1.1
1,910,904 - -0.7
1,910,979 + -1.7
1,910,980 - +0.6
1,911,134 + +0.1
1,911,134 + -0.1
1,911,134 + +0.3
1,911,134 + -0.3
1,911,135 - -0.2
1,911,135 - +0.9
1,911,135 - -1.3
1,911,135 - -1.0
1,911,135 - +0.9
1,911,224 + PP_1711 0.13 -0.4
1,911,225 - PP_1711 0.13 -0.1
1,911,225 - PP_1711 0.13 -0.1
1,911,225 - PP_1711 0.13 -0.7
1,911,336 + PP_1711 0.25 -1.2
1,911,336 + PP_1711 0.25 -0.2
1,911,336 + PP_1711 0.25 -0.2
1,911,337 - PP_1711 0.25 -1.2
1,911,337 - PP_1711 0.25 -2.6
1,911,337 - PP_1711 0.25 -0.6
1,911,337 - PP_1711 0.25 -0.3
1,911,337 - PP_1711 0.25 +0.4
1,911,337 - PP_1711 0.25 -2.6
1,911,523 - PP_1711 0.45 -0.9
1,911,632 + PP_1711 0.56 -0.2
1,911,633 - PP_1711 0.57 -0.8
1,911,773 + PP_1711 0.72 +0.6
1,911,774 - PP_1711 0.72 -0.4
1,911,774 - PP_1711 0.72 +0.2
1,911,789 - PP_1711 0.73 -0.0
1,911,789 - PP_1711 0.73 +0.6
1,911,872 + PP_1711 0.82 -1.4
1,911,872 + PP_1711 0.82 -0.6
1,911,872 + PP_1711 0.82 -0.4
1,911,872 + PP_1711 0.82 -0.7
1,911,916 - PP_1711 0.87 -1.2
1,911,916 - PP_1711 0.87 -0.7
1,912,034 + +0.0
1,912,035 - +1.3
1,912,060 + +1.8
1,912,060 + +1.3
1,912,063 + +0.8
1,912,063 + +0.2
1,912,063 + +1.7
1,912,064 - +0.1
1,912,064 - +1.1
1,912,119 + -0.2
1,912,119 + +1.2
1,912,120 - +2.6
1,912,164 + -3.1
1,912,184 + -0.4
1,912,187 - -0.0
1,912,239 + PP_1712 0.13 +0.5
1,912,318 - PP_1712 0.18 -1.9
1,912,340 + PP_1712 0.20 +2.3
1,912,341 - PP_1712 0.20 +0.4
1,912,374 + PP_1712 0.22 +0.9
1,912,414 + PP_1712 0.25 -2.0
1,912,415 - PP_1712 0.25 +0.7
1,912,415 - PP_1712 0.25 +0.1
1,912,415 - PP_1712 0.25 +0.4
1,912,415 - +0.7
1,912,463 - PP_1712 0.28 -0.4
1,912,463 - PP_1712 0.28 -1.7
1,912,503 + PP_1712 0.31 -0.1
1,912,517 + PP_1712 0.32 +0.1
1,912,518 - PP_1712 0.32 +1.2
1,912,518 - PP_1712 0.32 -0.4
1,912,518 - PP_1712 0.32 -0.4
1,912,609 + PP_1712 0.39 +0.1
1,912,629 + +3.3
1,912,630 - PP_1712 0.40 +0.0
1,912,630 - PP_1712 0.40 -0.9
1,912,630 - PP_1712 0.40 +0.8
1,912,630 - PP_1712 0.40 +1.3
1,912,634 - PP_1712 0.41 -1.1
1,912,634 - PP_1712 0.41 -0.6
1,912,769 + PP_1712 0.50 +0.3
1,912,769 + PP_1712 0.50 -1.4
1,912,770 - PP_1712 0.50 +0.5
1,912,770 - PP_1712 0.50 -0.1
1,912,770 - PP_1712 0.50 -0.1
1,912,770 - PP_1712 0.50 -2.1
1,912,907 + PP_1712 0.60 -0.3
1,912,908 - PP_1712 0.60 +0.8
1,912,909 + PP_1712 0.60 -0.8
1,912,909 + PP_1712 0.60 +0.3
1,912,909 + PP_1712 0.60 -2.2
1,912,909 + PP_1712 0.60 +0.6
1,912,909 + PP_1712 0.60 +1.3
1,912,976 + PP_1712 0.65 +0.7
1,913,031 + PP_1712 0.69 -0.5
1,913,032 - PP_1712 0.69 +0.3
1,913,032 - PP_1712 0.69 -1.3

Or see this region's nucleotide sequence