Strain Fitness in Pseudomonas putida KT2440 around PP_0523

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0521 and PP_0522 are separated by 180 nucleotidesPP_0522 and PP_0523 overlap by 4 nucleotidesPP_0523 and PP_0524 overlap by 1 nucleotidesPP_0524 and PP_0525 overlap by 23 nucleotides PP_0521: PP_0521 - conserved exported protein of unknown function, at 606,173 to 606,916 _0521 PP_0522: PP_0522 - GTP cyclohydrolase-2, at 607,097 to 607,714 _0522 PP_0523: PP_0523 - conserved membrane protein of unknown function, at 607,711 to 608,130 _0523 PP_0524: PP_0524 - putative Periplasmic cobalamin-binding protein HutB, at 608,130 to 608,942 _0524 PP_0525: PP_0525 - TonB-dependent receptor, B12 family, at 608,920 to 610,845 _0525 Position (kb) 607 608 609Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 606.764 kb on + strand, within PP_0521at 606.764 kb on + strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.782 kb on - strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.838 kb on - strand, within PP_0521at 606.841 kb on + strand, within PP_0521at 606.884 kb on + strandat 606.924 kb on + strandat 606.925 kb on - strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.935 kb on - strandat 606.935 kb on - strandat 606.935 kb on - strandat 606.936 kb on + strandat 606.937 kb on - strandat 606.983 kb on + strandat 606.986 kb on + strandat 606.986 kb on + strandat 606.987 kb on - strandat 607.008 kb on + strandat 607.018 kb on + strandat 607.018 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.021 kb on - strandat 607.051 kb on + strandat 607.080 kb on + strandat 607.080 kb on + strandat 607.900 kb on + strandat 607.900 kb on + strand, within PP_0523at 607.901 kb on - strand, within PP_0523at 607.914 kb on + strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.939 kb on - strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.090 kb on + strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.098 kb on + strandat 608.099 kb on - strandat 608.099 kb on - strandat 608.104 kb on + strandat 608.140 kb on + strandat 608.140 kb on + strandat 608.141 kb on - strandat 608.141 kb on - strandat 608.141 kb on - strandat 608.141 kb on - strandat 608.173 kb on + strandat 608.174 kb on - strandat 608.174 kb on - strandat 608.191 kb on + strandat 608.191 kb on + strandat 608.191 kb on + strandat 608.192 kb on - strandat 608.529 kb on + strand, within PP_0524at 608.574 kb on + strand, within PP_0524at 608.604 kb on + strand, within PP_0524at 608.629 kb on - strand, within PP_0524at 608.629 kb on - strand, within PP_0524at 608.728 kb on + strand, within PP_0524at 608.728 kb on + strand, within PP_0524at 608.728 kb on + strand, within PP_0524at 608.728 kb on + strand, within PP_0524at 608.748 kb on - strand, within PP_0524at 608.748 kb on - strand, within PP_0524at 608.921 kb on + strandat 608.981 kb on + strandat 608.981 kb on + strandat 609.002 kb on + strandat 609.002 kb on + strandat 609.003 kb on - strandat 609.003 kb on - strandat 609.003 kb on - strandat 609.017 kb on + strandat 609.018 kb on - strandat 609.058 kb on - strandat 609.073 kb on + strandat 609.074 kb on - strandat 609.123 kb on + strand, within PP_0525at 609.123 kb on + strandat 609.124 kb on - strand, within PP_0525at 609.124 kb on - strand, within PP_0525

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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606,764 + PP_0521 0.79 +0.4
606,764 + PP_0521 0.79 -1.4
606,765 - PP_0521 0.80 +0.5
606,765 - PP_0521 0.80 +1.1
606,765 - PP_0521 0.80 +1.6
606,782 - PP_0521 0.82 -0.9
606,837 + PP_0521 0.89 +0.2
606,837 + PP_0521 0.89 -1.6
606,837 + PP_0521 0.89 -0.5
606,837 + PP_0521 0.89 +2.1
606,838 - PP_0521 0.89 -1.6
606,841 + PP_0521 0.90 +2.0
606,884 + +0.1
606,924 + -2.9
606,925 - -1.8
606,934 + +0.3
606,934 + +0.5
606,934 + +0.4
606,934 + -1.9
606,934 + -0.7
606,934 + -0.1
606,934 + +1.0
606,935 - -0.5
606,935 - -0.2
606,935 - -1.3
606,936 + -2.2
606,937 - -1.6
606,983 + +0.2
606,986 + +1.0
606,986 + -0.3
606,987 - -1.1
607,008 + +1.5
607,018 + -3.7
607,018 + -0.7
607,020 + -1.4
607,020 + +0.1
607,020 + -1.5
607,020 + +0.7
607,020 + -0.5
607,020 + +1.0
607,020 + +0.9
607,021 - -1.1
607,051 + -1.1
607,080 + -2.6
607,080 + -1.4
607,900 + -0.7
607,900 + PP_0523 0.45 +0.1
607,901 - PP_0523 0.45 -0.7
607,914 + PP_0523 0.48 -2.9
607,915 - PP_0523 0.49 -0.5
607,915 - PP_0523 0.49 -0.3
607,915 - PP_0523 0.49 +1.0
607,915 - PP_0523 0.49 -0.5
607,915 - PP_0523 0.49 +1.5
607,915 - PP_0523 0.49 +0.3
607,939 - PP_0523 0.54 +0.2
607,997 + PP_0523 0.68 -0.5
607,997 + PP_0523 0.68 -1.1
607,997 + PP_0523 0.68 -1.8
607,997 + PP_0523 0.68 +1.2
607,997 + PP_0523 0.68 -0.4
607,997 + PP_0523 0.68 +0.1
607,997 + PP_0523 0.68 +1.0
607,997 + PP_0523 0.68 +0.4
607,997 + PP_0523 0.68 +1.5
607,997 + PP_0523 0.68 -0.9
607,997 + PP_0523 0.68 -0.5
607,997 + PP_0523 0.68 -1.5
607,997 + PP_0523 0.68 -0.4
607,998 - PP_0523 0.68 -3.2
607,998 - PP_0523 0.68 -2.2
607,998 - PP_0523 0.68 -1.4
607,998 - PP_0523 0.68 -0.7
607,998 - PP_0523 0.68 +1.3
607,998 - PP_0523 0.68 -1.6
607,998 - PP_0523 0.68 -0.7
607,998 - PP_0523 0.68 -1.3
607,998 - PP_0523 0.68 -0.8
607,998 - PP_0523 0.68 -1.1
607,998 - PP_0523 0.68 +0.3
607,998 - PP_0523 0.68 -1.1
607,998 - PP_0523 0.68 -1.2
607,999 + PP_0523 0.69 -2.4
607,999 + PP_0523 0.69 +0.4
607,999 + PP_0523 0.69 +0.8
607,999 + PP_0523 0.69 -0.3
607,999 + PP_0523 0.69 -3.0
607,999 + PP_0523 0.69 -0.3
607,999 + PP_0523 0.69 +0.1
607,999 + PP_0523 0.69 -3.0
607,999 + PP_0523 0.69 +1.5
607,999 + PP_0523 0.69 -3.1
608,000 - PP_0523 0.69 -0.1
608,000 - PP_0523 0.69 -1.8
608,000 - PP_0523 0.69 -2.7
608,000 - PP_0523 0.69 +0.8
608,090 + -1.2
608,091 - -1.4
608,091 - +1.0
608,091 - -0.2
608,091 - -1.2
608,091 - +0.7
608,098 + -1.5
608,099 - +0.0
608,099 - +1.1
608,104 + +0.3
608,140 + +0.3
608,140 + -1.3
608,141 - +0.4
608,141 - -0.7
608,141 - -0.6
608,141 - +0.3
608,173 + -2.2
608,174 - +0.8
608,174 - -0.4
608,191 + -0.4
608,191 + -2.5
608,191 + +2.3
608,192 - -0.5
608,529 + PP_0524 0.49 -2.3
608,574 + PP_0524 0.55 +0.6
608,604 + PP_0524 0.58 -0.8
608,629 - PP_0524 0.61 -2.3
608,629 - PP_0524 0.61 -0.6
608,728 + PP_0524 0.74 +1.4
608,728 + PP_0524 0.74 +1.4
608,728 + PP_0524 0.74 +1.4
608,728 + PP_0524 0.74 +0.1
608,748 - PP_0524 0.76 -1.5
608,748 - PP_0524 0.76 +0.7
608,921 + -0.9
608,981 + +0.1
608,981 + +0.4
609,002 + +0.4
609,002 + -0.0
609,003 - +0.4
609,003 - -1.3
609,003 - -2.7
609,017 + +0.2
609,018 - -0.6
609,058 - +0.4
609,073 + -3.2
609,074 - +0.1
609,123 + PP_0525 0.11 -0.1
609,123 + +0.3
609,124 - PP_0525 0.11 +0.8
609,124 - PP_0525 0.11 +0.8

Or see this region's nucleotide sequence