Strain Fitness in Pseudomonas putida KT2440 around PP_4975

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,666,293	-		PP_4974	0.25	+0.4
5,666,330	-		PP_4974	0.28	+0.4
5,666,380	+		PP_4974	0.32	+0.2
5,666,381	-		PP_4974	0.32	-0.1
5,666,446	-		PP_4974	0.37	-0.3
5,666,446	-		PP_4974	0.37	+0.4
5,666,446	-		PP_4974	0.37	-0.7
5,666,470	-		PP_4974	0.39	-0.5
5,666,523	-		PP_4974	0.43	-0.1
5,666,647	+		PP_4974	0.53	-0.4
5,666,709	-		PP_4974	0.58	+1.0
5,666,731	+		PP_4974	0.60	+2.1
5,666,732	-		PP_4974	0.60	+0.3
5,666,732	-		PP_4974	0.60	+0.6
5,666,831	-		PP_4974	0.68	+0.0
5,667,142	+				+0.6
5,667,142	+				-0.3
5,667,142	+				+0.9
5,667,142	+				+0.7
5,667,142	+				-2.9
5,667,142	+				+0.3
5,667,143	-				-0.2
5,667,143	-				-0.7
5,667,294	+				-0.6
5,667,330	+				+0.3
5,667,331	-				-0.0
5,667,434	-		PP_4975	0.35	+0.2
5,667,546	+		PP_4975	0.63	+0.2
5,667,546	+		PP_4975	0.63	+0.2
5,667,546	+		PP_4975	0.63	+0.2
5,667,546	+		PP_4975	0.63	+0.6
5,667,546	+		PP_4975	0.63	+0.2
5,667,546	+		PP_4975	0.63	+0.2
5,667,547	-		PP_4975	0.63	+0.0
5,667,588	+		PP_4975	0.73	-0.6
5,667,589	-		PP_4975	0.74	+0.6
5,667,699	-				-1.4
5,667,699	-				+0.1
5,667,724	+				+0.9
5,667,724	+				-0.7
5,667,724	+				+0.3
5,667,821	+				-0.1
5,667,821	+				-0.8
5,667,821	+				+0.6
5,667,821	+				+0.5
5,667,821	+				+0.7
5,667,822	-				-0.0
5,667,822	-				-0.9
5,667,822	-				-0.6
5,667,822	-				+0.5
5,667,823	+				-0.1
5,667,823	+				+0.3
5,667,823	+				-0.4
5,667,823	+				+0.5
5,667,838	+				+0.0
5,667,973	+				-0.2