Strain Fitness in Pseudomonas putida KT2440 around PP_4610

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,230,294	+		PP_4608	0.14	+0.0
5,230,295	-		PP_4608	0.15	-0.3
5,230,295	-		PP_4608	0.15	+0.8
5,230,295	-		PP_4608	0.15	-0.1
5,230,295	-		PP_4608	0.15	-1.2
5,230,295	-		PP_4608	0.15	-0.1
5,230,347	+		PP_4608	0.24	+1.1
5,230,348	-				-1.7
5,230,423	+		PP_4608	0.37	-0.3
5,230,522	+		PP_4608	0.54	+0.1
5,230,544	+		PP_4608	0.58	+0.1
5,230,544	+		PP_4608	0.58	+0.1
5,230,544	+		PP_4608	0.58	-0.7
5,230,545	-		PP_4608	0.58	+0.5
5,230,545	-		PP_4608	0.58	+1.1
5,230,575	+		PP_4608	0.63	-0.1
5,230,575	+		PP_4608	0.63	+1.0
5,230,575	+		PP_4608	0.63	+1.1
5,230,576	-				-0.1
5,230,679	+		PP_4608	0.81	-0.5
5,230,680	-		PP_4608	0.81	-0.7
5,230,976	-		PP_4609	0.56	-0.8
5,231,083	+		PP_4609	0.89	-0.4
5,231,083	+		PP_4609	0.89	-0.4
5,231,083	+				-1.7
5,231,083	+		PP_4609	0.89	-0.5
5,231,083	+		PP_4609	0.89	-0.1
5,231,084	-		PP_4609	0.89	-0.8
5,231,084	-		PP_4609	0.89	-1.6
5,231,084	-		PP_4609	0.89	-0.8
5,231,084	-		PP_4609	0.89	+0.5
5,231,179	-				+1.3
5,231,283	+		PP_4610	0.10	-1.5
5,231,391	-		PP_4610	0.17	-2.8
5,231,540	+		PP_4610	0.27	-0.3
5,231,540	+		PP_4610	0.27	-0.4
5,231,576	+		PP_4610	0.29	-0.5
5,231,576	+		PP_4610	0.29	-0.9
5,231,576	+		PP_4610	0.29	-0.3
5,231,576	+		PP_4610	0.29	-0.6
5,231,577	-		PP_4610	0.29	-0.9
5,231,577	-		PP_4610	0.29	+0.1
5,231,577	-		PP_4610	0.29	-1.3
5,231,671	+		PP_4610	0.35	-0.9
5,231,671	+		PP_4610	0.35	-0.5
5,231,671	+		PP_4610	0.35	-0.9
5,231,672	-		PP_4610	0.35	+0.0
5,231,672	-		PP_4610	0.35	-0.7
5,231,672	-		PP_4610	0.35	-0.8
5,231,743	-		PP_4610	0.40	-0.9
5,231,936	-		PP_4610	0.52	-0.3
5,232,017	-		PP_4610	0.57	-3.6
5,232,017	-		PP_4610	0.57	-1.9
5,232,017	-		PP_4610	0.57	+0.1
5,232,037	+		PP_4610	0.58	-1.0
5,232,038	-		PP_4610	0.58	-0.1
5,232,070	+		PP_4610	0.60	-0.4
5,232,070	+		PP_4610	0.60	-0.3
5,232,071	-		PP_4610	0.60	-0.2
5,232,071	-		PP_4610	0.60	-1.1
5,232,071	-		PP_4610	0.60	-0.8
5,232,071	-		PP_4610	0.60	-0.7
5,232,094	+		PP_4610	0.62	+0.1
5,232,094	+		PP_4610	0.62	-0.8
5,232,095	-		PP_4610	0.62	-1.2
5,232,095	-		PP_4610	0.62	+0.7
5,232,215	+		PP_4610	0.70	-0.3
5,232,216	-		PP_4610	0.70	-1.1
5,232,317	-		PP_4610	0.76	+0.7
5,232,502	+		PP_4610	0.88	-0.9
5,232,503	-		PP_4610	0.88	+0.1
5,232,524	+		PP_4610	0.89	-0.6
5,232,525	-		PP_4610	0.89	-1.4
5,232,816	+		PP_5699	0.41	+0.4
5,232,886	+		PP_5699	0.63	-0.9
5,232,886	+		PP_5699	0.63	-0.1
5,232,887	-		PP_5699	0.64	-0.5
5,232,887	-		PP_5699	0.64	-0.8
5,232,887	-		PP_5699	0.64	-0.5
5,232,887	-		PP_5699	0.64	-1.4
5,232,915	+		PP_5699	0.73	-0.2
5,232,916	-		PP_5699	0.73	-0.0
5,232,964	-		PP_5699	0.89	+0.4
5,233,148	+				-0.4
5,233,148	+				-0.0
5,233,149	-				+0.4
5,233,169	+				+0.0
5,233,169	+				+0.6
5,233,170	-				-0.8
5,233,191	+		PP_4611	0.11	-1.6
5,233,278	+		PP_4611	0.27	+0.2
5,233,278	+		PP_4611	0.27	+0.2
5,233,278	+		PP_4611	0.27	-0.6
5,233,278	+		PP_4611	0.27	-0.1
5,233,278	+		PP_4611	0.27	-0.6
5,233,279	-		PP_4611	0.28	+0.4
5,233,279	-		PP_4611	0.28	-0.1
5,233,279	-		PP_4611	0.28	-0.9
5,233,279	-		PP_4611	0.28	-0.4
5,233,279	-		PP_4611	0.28	+1.4
5,233,279	-		PP_4611	0.28	-0.2
5,233,357	+		PP_4611	0.43	-0.2
5,233,358	-		PP_4611	0.43	-0.3
5,233,365	-		PP_4611	0.44	-0.9
5,233,398	+		PP_4611	0.51	-0.3
5,233,477	+		PP_4611	0.66	+0.4
5,233,478	-		PP_4611	0.66	+0.4
5,233,587	+		PP_4611	0.88	-0.6