Strain Fitness in Pseudomonas putida KT2440 around PP_1000

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,137,775	+		PP_0999	0.25	-1.4
1,137,775	+		PP_0999	0.25	-2.5
1,137,776	-		PP_0999	0.25	-1.1
1,137,898	+		PP_0999	0.38	-3.2
1,137,898	+		PP_0999	0.38	-1.1
1,137,898	+		PP_0999	0.38	-1.8
1,137,898	+		PP_0999	0.38	-2.1
1,137,899	-		PP_0999	0.39	-2.2
1,138,018	+		PP_0999	0.51	-1.8
1,138,087	+		PP_0999	0.59	-3.2
1,138,279	+		PP_0999	0.79	-1.2
1,138,388	+				-1.1
1,138,463	+				-1.9
1,138,631	+				-2.7
1,138,635	+				+0.3
1,138,635	+				-0.8
1,138,635	+				-0.4
1,138,635	+				-1.0
1,138,635	+				-1.5
1,138,636	-				-1.1
1,138,636	-				-0.2
1,138,637	+				-2.1
1,138,637	+				-2.1
1,138,638	-				-3.9
1,138,884	+		PP_1000	0.25	-1.8
1,139,163	+		PP_1000	0.52	-1.1
1,139,163	+		PP_1000	0.52	-0.7
1,139,170	-		PP_1000	0.53	-1.3
1,139,170	-		PP_1000	0.53	-2.9
1,139,170	-		PP_1000	0.53	-3.0
1,139,244	+		PP_1000	0.60	-2.1
1,139,326	-		PP_1000	0.68	-3.2
1,139,340	+		PP_1000	0.70	-3.0
1,139,340	+		PP_1000	0.70	-2.9
1,139,340	+		PP_1000	0.70	-1.0
1,139,341	-		PP_1000	0.70	-1.6
1,139,341	-		PP_1000	0.70	-2.3
1,139,415	+		PP_1000	0.77	-2.7
1,139,416	-		PP_1000	0.77	+3.1
1,139,416	-		PP_1000	0.77	-2.2
1,139,439	+		PP_1000	0.80	-3.8
1,139,439	+		PP_1000	0.80	-3.0
1,139,440	-		PP_1000	0.80	-2.1
1,139,538	+		PP_1000	0.89	-2.4
1,139,538	+		PP_1000	0.89	-1.9
1,139,578	-				-2.9
1,139,706	-				-2.1
1,139,715	+				-0.8
1,139,716	-				-1.2
1,139,718	+				-1.6
1,139,719	-				-1.1
1,139,841	+		PP_1001	0.10	-0.5
1,139,842	-		PP_1001	0.10	-2.7
1,139,842	-		PP_1001	0.10	-2.3
1,140,015	-		PP_1001	0.24	-2.8
1,140,027	+		PP_1001	0.25	-3.8
1,140,251	-		PP_1001	0.43	-3.5
1,140,381	+		PP_1001	0.53	-3.1
1,140,426	+		PP_1001	0.57	-0.3
1,140,427	-		PP_1001	0.57	-2.3
1,140,537	+		PP_1001	0.66	-0.8
1,140,537	+		PP_1001	0.66	-1.7
1,140,644	-		PP_1001	0.74	-1.1
1,140,644	-		PP_1001	0.74	-0.8