Strain Fitness in Pseudomonas putida KT2440 around PP_0089

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0088 and PP_0089 are separated by 152 nucleotidesPP_0089 and PP_0090 are separated by 12 nucleotidesPP_0090 and PP_0091 are separated by 35 nucleotidesPP_0091 and PP_0092 are separated by 55 nucleotides PP_0088: PP_0088 - putative alkanal monooxygenase, at 95,680 to 96,684 _0088 PP_0089: PP_0089 - stress-induced peroxiredoxin, lipoyl-dependent peroxidase, at 96,837 to 97,262 _0089 PP_0090: PP_0090 - conserved exported protein of unknown function, at 97,275 to 97,571 _0090 PP_0091: PP_0091 - putative lipoprotein, at 97,607 to 98,020 _0091 PP_0092: PP_0092 - putative lipoprotein, at 98,076 to 98,489 _0092 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1at 95.955 kb on - strand, within PP_0088at 95.973 kb on - strand, within PP_0088at 95.973 kb on - strand, within PP_0088at 96.026 kb on + strand, within PP_0088at 96.026 kb on + strand, within PP_0088at 96.026 kb on + strand, within PP_0088at 96.026 kb on + strand, within PP_0088at 96.026 kb on + strand, within PP_0088at 96.093 kb on - strand, within PP_0088at 96.123 kb on - strand, within PP_0088at 96.200 kb on + strand, within PP_0088at 96.249 kb on - strand, within PP_0088at 96.317 kb on + strand, within PP_0088at 96.317 kb on + strand, within PP_0088at 96.318 kb on - strand, within PP_0088at 96.318 kb on - strand, within PP_0088at 96.462 kb on + strand, within PP_0088at 96.463 kb on - strand, within PP_0088at 96.463 kb on - strand, within PP_0088at 96.486 kb on - strand, within PP_0088at 96.730 kb on - strandat 96.765 kb on + strandat 96.765 kb on + strandat 96.765 kb on + strandat 96.766 kb on - strandat 96.766 kb on - strandat 96.766 kb on - strandat 96.766 kb on - strandat 96.766 kb on - strandat 96.766 kb on - strandat 96.806 kb on + strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.899 kb on + strand, within PP_0089at 96.930 kb on + strand, within PP_0089at 97.049 kb on + strand, within PP_0089at 97.049 kb on + strand, within PP_0089at 97.050 kb on - strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.290 kb on - strandat 97.294 kb on + strandat 97.294 kb on + strandat 97.294 kb on + strandat 97.295 kb on - strandat 97.348 kb on + strand, within PP_0090at 97.348 kb on + strand, within PP_0090at 97.348 kb on + strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.352 kb on + strand, within PP_0090at 97.353 kb on - strand, within PP_0090at 97.551 kb on + strandat 97.551 kb on + strandat 97.552 kb on - strandat 97.552 kb on - strandat 97.626 kb on + strandat 97.630 kb on + strandat 97.631 kb on - strandat 97.665 kb on + strand, within PP_0091at 97.665 kb on + strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.797 kb on + strand, within PP_0091at 97.807 kb on - strand, within PP_0091at 97.923 kb on + strand, within PP_0091at 97.923 kb on + strand, within PP_0091at 97.924 kb on - strand, within PP_0091at 97.924 kb on - strand, within PP_0091at 97.987 kb on + strandat 97.987 kb on + strandat 97.987 kb on + strandat 97.987 kb on + strandat 97.988 kb on - strandat 97.988 kb on - strandat 97.988 kb on - strandat 98.049 kb on + strandat 98.049 kb on + strandat 98.058 kb on + strandat 98.058 kb on + strandat 98.059 kb on - strandat 98.142 kb on + strandat 98.261 kb on + strand, within PP_0092

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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95,955 - PP_0088 0.27 +0.8
95,973 - PP_0088 0.29 -1.2
95,973 - PP_0088 0.29 -0.4
96,026 + PP_0088 0.34 -0.4
96,026 + PP_0088 0.34 +0.7
96,026 + PP_0088 0.34 -0.0
96,026 + PP_0088 0.34 -0.9
96,026 + PP_0088 0.34 -0.5
96,093 - PP_0088 0.41 -0.4
96,123 - PP_0088 0.44 +0.6
96,200 + PP_0088 0.52 +1.2
96,249 - PP_0088 0.57 -0.2
96,317 + PP_0088 0.63 +0.1
96,317 + PP_0088 0.63 -0.8
96,318 - PP_0088 0.63 +0.5
96,318 - PP_0088 0.63 +1.0
96,462 + PP_0088 0.78 -0.8
96,463 - PP_0088 0.78 -0.9
96,463 - PP_0088 0.78 -0.8
96,486 - PP_0088 0.80 +0.4
96,730 - -0.0
96,765 + -0.1
96,765 + -0.4
96,765 + -2.1
96,766 - +1.1
96,766 - +0.5
96,766 - -0.1
96,766 - -0.1
96,766 - -0.3
96,766 - -1.1
96,806 + +0.2
96,811 - -0.1
96,811 - -0.2
96,811 - +0.6
96,811 - +0.6
96,811 - -0.4
96,811 - -1.1
96,811 - +0.3
96,899 + PP_0089 0.15 +0.4
96,930 + PP_0089 0.22 +0.5
97,049 + PP_0089 0.50 +0.9
97,049 + PP_0089 0.50 +0.3
97,050 - PP_0089 0.50 +0.5
97,147 + PP_0089 0.73 -0.1
97,147 + PP_0089 0.73 +1.5
97,147 + PP_0089 0.73 +0.7
97,147 + PP_0089 0.73 +0.5
97,290 - +0.7
97,294 + +0.3
97,294 + -0.8
97,294 + +0.6
97,295 - +0.0
97,348 + PP_0090 0.25 +0.2
97,348 + PP_0090 0.25 -0.4
97,348 + PP_0090 0.25 +0.3
97,349 - PP_0090 0.25 +0.4
97,349 - PP_0090 0.25 +0.1
97,349 - PP_0090 0.25 +1.0
97,349 - PP_0090 0.25 +0.6
97,352 + PP_0090 0.26 -0.5
97,353 - PP_0090 0.26 -0.0
97,551 + -0.3
97,551 + -0.4
97,552 - +0.1
97,552 - +0.2
97,626 + -1.1
97,630 + +0.6
97,631 - +0.7
97,665 + PP_0091 0.14 -0.4
97,665 + PP_0091 0.14 +0.0
97,666 - PP_0091 0.14 +0.5
97,666 - PP_0091 0.14 -0.2
97,666 - PP_0091 0.14 +0.4
97,667 + PP_0091 0.14 -0.3
97,667 + PP_0091 0.14 +0.8
97,667 + PP_0091 0.14 -0.8
97,667 + PP_0091 0.14 +1.2
97,667 + PP_0091 0.14 +0.1
97,668 - PP_0091 0.15 -0.0
97,668 - PP_0091 0.15 +0.5
97,668 - PP_0091 0.15 +0.4
97,668 - PP_0091 0.15 +1.4
97,668 - PP_0091 0.15 -0.1
97,668 - PP_0091 0.15 +0.7
97,668 - PP_0091 0.15 -0.4
97,668 - PP_0091 0.15 +0.1
97,797 + PP_0091 0.46 +0.1
97,807 - PP_0091 0.48 +0.0
97,923 + PP_0091 0.76 +0.2
97,923 + PP_0091 0.76 +0.5
97,924 - PP_0091 0.77 +0.1
97,924 - PP_0091 0.77 -0.1
97,987 + -0.1
97,987 + -0.2
97,987 + -0.1
97,987 + -0.6
97,988 - -0.7
97,988 - -0.4
97,988 - -0.3
98,049 + +1.1
98,049 + +0.3
98,058 + -0.4
98,058 + +0.7
98,059 - -0.2
98,142 + -0.9
98,261 + PP_0092 0.45 +0.0

Or see this region's nucleotide sequence