Strain Fitness in Pseudomonas putida KT2440 around PP_t13

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,401,495	+		PP_1225	0.75	+0.9
1,401,496	-		PP_1225	0.76	+0.9
1,401,496	-		PP_1225	0.76	-0.1
1,401,598	+				-0.1
1,401,599	-				-3.1
1,401,666	+				+0.4
1,401,666	+				+0.0
1,401,666	+				-0.4
1,401,666	+				-1.3
1,401,666	+				-0.3
1,401,667	-				+2.5
1,401,667	-				-0.5
1,401,690	+				+0.9
1,401,691	-				-3.7
1,401,691	-				-0.9
1,401,761	+		PP_1226	0.13	-0.2
1,401,950	+		PP_1226	0.41	+0.1
1,401,950	+		PP_1226	0.41	+0.5
1,401,950	+		PP_1226	0.41	+0.7
1,401,950	+		PP_1226	0.41	+0.0
1,401,951	-		PP_1226	0.41	-1.5
1,401,951	-		PP_1226	0.41	-0.6
1,402,005	+		PP_1226	0.49	+0.0
1,402,050	-		PP_1226	0.56	-0.7
1,402,128	+		PP_1226	0.68	+0.6
1,402,128	+		PP_1226	0.68	-0.6
1,402,129	-		PP_1226	0.68	+0.4
1,402,129	-		PP_1226	0.68	-2.4
1,402,217	+		PP_1226	0.81	-1.7
1,402,238	+		PP_1226	0.84	-0.7
1,402,338	-				+0.2
1,402,414	-		PP_t13	0.11	-0.4
1,402,426	-		PP_t13	0.26	-0.8
1,402,442	-		PP_t13	0.47	-0.5
1,402,468	+		PP_t13	0.82	-1.4
1,402,489	+				+0.5
1,402,490	-				-1.5
1,402,576	+				+0.4
1,402,759	+		PP_1227	0.19	+0.8
1,402,760	-		PP_1227	0.19	+0.5
1,402,769	-		PP_1227	0.20	-0.1
1,402,815	+		PP_1227	0.25	-0.1
1,402,815	+		PP_1227	0.25	+0.1
1,402,815	+		PP_1227	0.25	+1.0
1,402,816	-		PP_1227	0.25	+1.0
1,402,816	-		PP_1227	0.25	-0.3
1,402,934	+		PP_1227	0.37	-0.1
1,402,936	+		PP_1227	0.38	+0.5
1,402,936	+		PP_1227	0.38	-0.2
1,402,936	+		PP_1227	0.38	-0.3
1,402,936	+		PP_1227	0.38	+0.7
1,402,936	+		PP_1227	0.38	+0.3
1,402,936	+		PP_1227	0.38	+0.9
1,402,936	+		PP_1227	0.38	-0.0
1,402,936	+		PP_1227	0.38	-0.1
1,402,937	-		PP_1227	0.38	-0.3
1,402,937	-		PP_1227	0.38	-0.7
1,402,937	-		PP_1227	0.38	+0.1
1,403,203	+		PP_1227	0.65	-1.2
1,403,204	-		PP_1227	0.66	-0.0
1,403,204	-		PP_1227	0.66	-1.3
1,403,204	-		PP_1227	0.66	-1.1
1,403,244	+		PP_1227	0.70	-0.6
1,403,244	+		PP_1227	0.70	+0.3
1,403,385	+		PP_1227	0.84	+0.8
1,403,385	+		PP_1227	0.84	-0.1
1,403,478	+				-2.2
1,403,479	-				-0.3
1,403,479	-				-0.5