Strain Fitness in Pseudomonas putida KT2440 around PP_5491

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,186,857	+		PP_1936	0.74	+0.4
2,186,900	+		PP_1936	0.76	-0.7
2,186,901	-		PP_1936	0.76	-0.3
2,186,992	-		PP_1936	0.79	-0.9
2,187,073	-		PP_1936	0.82	-0.3
2,187,073	-		PP_1936	0.82	+0.0
2,187,112	-		PP_1936	0.83	+1.0
2,187,192	+		PP_1936	0.86	-0.0
2,187,668	-				+1.5
2,187,745	+		PP_5491	0.15	-0.9
2,188,158	-		PP_5491	0.60	-0.1
2,188,220	+		PP_5491	0.67	-0.1
2,188,402	+		PP_5491	0.86	-1.6
2,188,522	-				+1.5
2,188,631	+		PP_5492	0.19	+0.7
2,188,642	+		PP_5492	0.21	-1.4
2,188,642	+		PP_5492	0.21	+1.2
2,188,697	+		PP_5492	0.31	-0.3
2,188,990	+		PP_5492	0.84	-1.6
2,188,990	+		PP_5492	0.84	+0.3
2,188,990	+		PP_5492	0.84	+0.8
2,188,991	-		PP_5492	0.84	-0.1
2,188,991	-		PP_5492	0.84	-2.0
2,188,991	-		PP_5492	0.84	+0.2
2,189,041	+				+0.6
2,189,057	-				-0.6
2,189,097	+				+0.4
2,189,102	+				-0.7
2,189,103	-				-1.1
2,189,133	+				-0.4
2,189,259	+				-1.3
2,189,259	+				+0.3
2,189,291	-				+0.4
2,189,310	+				+0.0
2,189,311	-				+0.3
2,189,311	-				+0.7
2,189,440	+				+0.2
2,189,440	+				-0.3
2,189,441	-				-0.1
2,189,484	-		PP_1937	0.11	-0.2
2,189,484	-		PP_1937	0.11	-0.4
2,189,486	+		PP_1937	0.11	-1.0
2,189,486	+		PP_1937	0.11	+0.8
2,189,486	+		PP_1937	0.11	+0.9
2,189,486	+		PP_1937	0.11	+0.1
2,189,486	+		PP_1937	0.11	-0.3
2,189,487	-		PP_1937	0.11	+0.3
2,189,487	-		PP_1937	0.11	+0.3