Strain Fitness in Pseudomonas putida KT2440 around PP_5486

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,178,509	+		PP_1931	0.52	+0.4
2,178,509	+		PP_1931	0.52	-0.3
2,178,511	+		PP_1931	0.52	+0.9
2,178,511	+		PP_1931	0.52	+0.4
2,178,512	-		PP_1931	0.52	-0.8
2,178,512	-		PP_1931	0.52	+0.3
2,178,516	+		PP_1931	0.52	+0.6
2,178,516	+		PP_1931	0.52	-0.1
2,178,517	-		PP_1931	0.52	+0.3
2,178,517	-		PP_1931	0.52	-1.6
2,178,517	-		PP_1931	0.52	+0.1
2,178,517	-		PP_1931	0.52	-2.2
2,178,517	-		PP_1931	0.52	-1.3
2,178,666	-		PP_1931	0.63	+1.2
2,178,668	+		PP_1931	0.63	-0.0
2,178,669	-		PP_1931	0.63	+0.6
2,178,669	-		PP_1931	0.63	+0.3
2,178,669	-		PP_1931	0.63	+0.7
2,178,669	-		PP_1931	0.63	-1.0
2,178,669	-		PP_1931	0.63	+0.2
2,178,739	+		PP_1931	0.68	-0.1
2,178,739	+		PP_1931	0.68	-0.9
2,178,739	+				-0.1
2,178,739	+		PP_1931	0.68	-0.9
2,178,740	-		PP_1931	0.68	+0.5
2,178,782	+		PP_1931	0.71	+0.4
2,178,782	+		PP_1931	0.71	-0.8
2,178,804	-				-0.7
2,178,840	-		PP_1931	0.75	-0.6
2,178,840	-		PP_1931	0.75	+0.6
2,178,875	+		PP_1931	0.77	-1.2
2,178,876	-		PP_1931	0.77	+0.8
2,178,876	-		PP_1931	0.77	-1.6
2,178,876	-		PP_1931	0.77	-0.2
2,178,919	+		PP_1931	0.80	-0.0
2,178,920	-		PP_1931	0.80	-0.3
2,179,105	+				+0.5
2,179,105	+				-0.3
2,179,136	+				-0.3
2,179,136	+				-0.4
2,179,136	+				-1.1
2,179,137	-				-0.4
2,179,210	-				+0.4
2,179,210	-				-1.2
2,179,291	+				+0.9
2,179,329	+				-0.7
2,179,329	+				-1.2
2,179,329	+				-0.6
2,179,329	+				+2.9
2,179,330	-				-0.2
2,179,330	-				+1.2
2,179,330	-				-1.5
2,179,330	-				-0.8
2,179,414	-				-0.0
2,179,443	-				-1.7
2,179,457	+				-0.5
2,179,458	-				-1.3
2,179,511	-		PP_5486	0.21	-1.3
2,179,592	+		PP_5486	0.62	-1.0
2,179,653	-				-0.0
2,179,673	+				+0.2
2,179,701	-				-0.4
2,179,701	-				+0.1
2,179,701	-				-1.3
2,179,701	-				+2.4
2,179,704	-				-0.1
2,179,704	-				+0.3
2,179,704	-				-1.5
2,179,704	-				+0.2
2,179,704	-				+0.1
2,179,704	-				+1.1
2,179,718	+				+0.0
2,179,718	+				+0.2
2,179,718	+				+0.8
2,179,718	+				-0.6
2,179,718	+				-0.2
2,179,719	-				-0.2
2,179,719	-				+1.0
2,179,719	-				-0.6
2,179,740	+				-0.4
2,179,772	+				-0.3
2,179,773	-				+0.2
2,179,808	-				-0.2
2,179,808	-				-0.2
2,179,808	-				+0.7
2,179,851	-				-0.2
2,179,912	+		PP_1932	0.14	+1.7
2,179,912	+		PP_1932	0.14	+0.6
2,179,912	+				+2.2
2,179,926	+		PP_1932	0.16	+0.8
2,179,927	-		PP_1932	0.16	+1.4
2,179,927	-		PP_1932	0.16	+0.2
2,179,955	-		PP_1932	0.20	-0.0
2,180,084	-		PP_1932	0.37	-1.0
2,180,111	+		PP_1932	0.41	+0.5
2,180,130	+		PP_1932	0.43	+0.4
2,180,131	-		PP_1932	0.43	-2.2
2,180,155	-		PP_1932	0.47	+0.6
2,180,161	+		PP_1932	0.47	+0.1
2,180,162	-		PP_1932	0.47	+0.3
2,180,162	-		PP_1932	0.47	-0.3
2,180,162	-		PP_1932	0.47	-1.1
2,180,243	+		PP_1932	0.58	+0.4
2,180,243	+		PP_1932	0.58	-1.1
2,180,243	+		PP_1932	0.58	+2.2
2,180,244	-		PP_1932	0.58	+2.0
2,180,398	+		PP_1932	0.79	+0.4
2,180,398	+		PP_1932	0.79	-0.1
2,180,497	+				-1.3
2,180,498	-				-1.7
2,180,508	+				-0.3
2,180,509	-				-0.3
2,180,523	+				+0.3
2,180,523	+				+0.4
2,180,612	+				+0.4
2,180,613	-				-0.9
2,180,613	-				+0.1
2,180,613	-				+0.1