Strain Fitness in Pseudomonas putida KT2440 around PP_5337

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
6,083,662	-				+0.1
6,083,666	-				-3.0
6,083,666	-				-2.3
6,083,686	+				-0.2
6,083,686	+				-0.2
6,083,687	-				+0.0
6,083,788	+				-0.2
6,083,789	-				+1.0
6,083,789	-				-1.0
6,083,789	-				-0.8
6,083,851	+				-0.2
6,083,852	-				-0.0
6,083,865	+				-0.1
6,083,866	-				-0.3
6,083,891	+				+0.0
6,084,047	+		PP_5337	0.27	-0.2
6,084,058	-		PP_5337	0.28	-1.5
6,084,058	-		PP_5337	0.28	+0.2
6,084,059	+		PP_5337	0.28	-1.2
6,084,060	-		PP_5337	0.28	-2.5
6,084,123	-		PP_5337	0.35	+0.3
6,084,123	-		PP_5337	0.35	-1.4
6,084,123	-		PP_5337	0.35	-0.4
6,084,123	-		PP_5337	0.35	-0.2
6,084,123	-		PP_5337	0.35	-2.1
6,084,128	-		PP_5337	0.35	-0.6
6,084,272	+		PP_5337	0.51	-2.9
6,084,273	-		PP_5337	0.51	-1.5
6,084,316	+		PP_5337	0.56	-2.9
6,084,316	+		PP_5337	0.56	-0.8
6,084,316	+		PP_5337	0.56	+2.5
6,084,316	+		PP_5337	0.56	-2.4
6,084,316	+		PP_5337	0.56	-0.8
6,084,317	-		PP_5337	0.56	-0.2
6,084,317	-		PP_5337	0.56	-0.5
6,084,317	-		PP_5337	0.56	-0.5
6,084,334	-		PP_5337	0.58	-0.8
6,084,789	+				-0.8
6,084,805	-				-1.1
6,084,895	+				+0.1
6,084,896	-				-2.4
6,084,896	-				+0.3
6,084,897	+				-1.9
6,084,898	-				-1.7
6,084,898	-				-2.4
6,084,898	-				-1.4
6,084,898	-				+1.4
6,084,972	+				-3.4
6,084,972	+				-2.3
6,084,972	+				+0.3
6,084,972	+				-0.9
6,084,975	+				+1.0
6,084,975	+				+5.7
6,084,975	+				+0.3
6,085,214	+		PP_5338	0.22	-1.0
6,085,220	+		PP_5338	0.23	+0.1
6,085,220	+		PP_5338	0.23	+1.8
6,085,220	+		PP_5338	0.23	-0.9
6,085,221	-		PP_5338	0.23	-1.7
6,085,307	+		PP_5338	0.29	-0.4
6,085,308	-		PP_5338	0.29	-0.2
6,085,409	+		PP_5338	0.36	-3.3
6,085,456	+		PP_5338	0.39	-1.2