Strain Fitness in Pseudomonas putida KT2440 around PP_5328

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
6,073,290	-		PP_5327	0.42	-0.8
6,073,462	-		PP_5327	0.52	-1.4
6,073,826	-		PP_5327	0.74	-2.9
6,073,826	-		PP_5327	0.74	+0.2
6,073,832	-		PP_5327	0.75	-1.4
6,073,832	-		PP_5327	0.75	-3.4
6,073,832	-		PP_5327	0.75	+0.6
6,073,832	-		PP_5327	0.75	+3.6
6,073,948	-		PP_5327	0.82	-1.4
6,073,948	-		PP_5327	0.82	-1.9
6,073,948	-		PP_5327	0.82	+0.8
6,074,029	-		PP_5327	0.86	-2.3
6,074,090	-				-1.5
6,074,090	-				-2.3
6,074,090	-				+0.1
6,074,272	-				-0.6
6,074,740	-		PP_5328	0.20	-3.1
6,074,740	-		PP_5328	0.20	-2.9
6,074,751	-		PP_5328	0.21	+4.2
6,074,751	-		PP_5328	0.21	-0.2
6,074,883	-		PP_5328	0.27	+0.6
6,075,103	-		PP_5328	0.36	+0.1
6,075,112	-		PP_5328	0.37	+0.1
6,075,112	-		PP_5328	0.37	-0.7
6,075,157	-		PP_5328	0.39	-2.3
6,076,438	-				-2.6
6,076,598	-				-0.3
6,076,598	-				-0.8
6,076,598	-				-1.7
6,076,693	+				+0.1
6,076,693	+				-0.3
6,076,693	+				-0.7
6,076,697	+				-0.8
6,076,697	+				-0.0
6,076,697	+				+0.2
6,076,697	+				-0.7
6,076,698	-				-2.4
6,076,698	-				-0.2
6,076,698	-				+0.5
6,076,701	+				-0.4
6,076,701	+				+0.8
6,076,702	-				+0.4
6,076,702	-				-0.0
6,076,702	-				-1.1
6,076,782	+				-1.1
6,076,782	+				-2.2
6,076,782	+				-2.9
6,076,783	-				-3.9
6,076,864	-		PP_5329	0.16	-1.7
6,076,884	+		PP_5329	0.18	+0.5
6,077,004	+		PP_5329	0.30	-1.4
6,077,004	+		PP_5329	0.30	-0.8
6,077,005	-		PP_5329	0.31	-0.7
6,077,090	-		PP_5329	0.39	-0.4
6,077,130	+		PP_5329	0.43	-0.7
6,077,131	-		PP_5329	0.43	+1.6
6,077,131	-		PP_5329	0.43	+0.6
6,077,136	+		PP_5329	0.44	-1.7
6,077,136	+		PP_5329	0.44	-0.9
6,077,136	+		PP_5329	0.44	-2.2
6,077,136	+		PP_5329	0.44	-0.7
6,077,137	-		PP_5329	0.44	-0.4
6,077,361	+		PP_5329	0.66	+1.4
6,077,368	-		PP_5329	0.67	-2.4
6,077,368	-		PP_5329	0.67	-1.9
6,077,492	+		PP_5329	0.79	+0.8
6,077,514	+		PP_5329	0.81	-0.7
6,077,515	-		PP_5329	0.82	+0.6
6,077,515	-		PP_5329	0.82	+0.2