Strain Fitness in Pseudomonas putida KT2440 around PP_5327

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
6,072,525	-				+0.9
6,072,525	-				-0.3
6,072,605	-				-0.2
6,072,689	-				-1.4
6,072,740	-				+0.0
6,072,740	-				-0.3
6,072,740	-				+1.4
6,072,740	-				-3.5
6,072,785	-		PP_5327	0.12	-3.4
6,072,835	-		PP_5327	0.15	-2.9
6,072,835	-		PP_5327	0.15	-1.5
6,072,835	-		PP_5327	0.15	+2.2
6,073,145	-		PP_5327	0.34	+0.4
6,073,145	-		PP_5327	0.34	-0.2
6,073,262	-		PP_5327	0.41	-0.9
6,073,290	-		PP_5327	0.42	-0.8
6,073,462	-		PP_5327	0.52	-1.4
6,073,826	-		PP_5327	0.74	-2.9
6,073,826	-		PP_5327	0.74	+0.2
6,073,832	-		PP_5327	0.75	-1.4
6,073,832	-		PP_5327	0.75	-3.4
6,073,832	-		PP_5327	0.75	+0.6
6,073,832	-		PP_5327	0.75	+3.6
6,073,948	-		PP_5327	0.82	-1.4
6,073,948	-		PP_5327	0.82	-1.9
6,073,948	-		PP_5327	0.82	+0.8
6,074,029	-		PP_5327	0.86	-2.3
6,074,090	-				-1.5
6,074,090	-				-2.3
6,074,090	-				+0.1
6,074,272	-				-0.6
6,074,740	-		PP_5328	0.20	-3.1
6,074,740	-		PP_5328	0.20	-2.9
6,074,751	-		PP_5328	0.21	+4.2
6,074,751	-		PP_5328	0.21	-0.2
6,074,883	-		PP_5328	0.27	+0.6
6,075,103	-		PP_5328	0.36	+0.1
6,075,112	-		PP_5328	0.37	+0.1
6,075,112	-		PP_5328	0.37	-0.7
6,075,157	-		PP_5328	0.39	-2.3