Strain Fitness in Pseudomonas putida KT2440 around PP_5309

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
6,055,078	+				-0.3
6,055,841	+				-0.6
6,055,842	-				+0.1
6,055,873	+				-0.9
6,055,873	+				-0.8
6,055,873	+				+0.1
6,055,874	-				-0.7
6,055,891	-				-0.1
6,055,895	+				-1.9
6,056,038	-		PP_5309	0.18	-0.7
6,056,086	-		PP_5309	0.23	-3.6
6,056,168	+		PP_5309	0.32	-0.8
6,056,168	+		PP_5309	0.32	-0.6
6,056,168	+		PP_5309	0.32	+0.2
6,056,169	-		PP_5309	0.32	-1.2
6,056,240	+		PP_5309	0.39	-1.9
6,056,241	-		PP_5309	0.40	-1.3
6,056,241	-		PP_5309	0.40	-4.1
6,056,265	+		PP_5309	0.42	+0.6
6,056,265	+		PP_5309	0.42	-0.8
6,056,266	-		PP_5309	0.42	-0.5
6,056,266	-		PP_5309	0.42	-0.5
6,056,352	+		PP_5309	0.52	-0.1
6,056,353	-		PP_5309	0.52	-0.5
6,056,354	+		PP_5309	0.52	-0.6
6,056,354	+		PP_5309	0.52	+2.2
6,056,354	+		PP_5309	0.52	-1.3
6,056,354	+		PP_5309	0.52	-1.8
6,056,355	-		PP_5309	0.52	-2.8
6,056,355	-		PP_5309	0.52	-1.0
6,056,355	-		PP_5309	0.52	-0.6
6,056,484	+		PP_5309	0.66	+0.8
6,056,633	+		PP_5309	0.82	-0.5
6,056,835	+				-0.7
6,056,835	+				-2.7
6,057,086	+		PP_5310	0.14	-0.9
6,057,086	+		PP_5310	0.14	-0.1
6,057,087	-		PP_5310	0.14	-0.3
6,057,183	-		PP_5310	0.18	+0.2
6,057,254	+		PP_5310	0.22	-0.5
6,057,405	-		PP_5310	0.29	-1.2
6,057,588	-				+0.6
6,057,596	-		PP_5310	0.38	-1.1
6,057,650	+		PP_5310	0.41	-0.7