Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5252 and PP_5253 are separated by 199 nucleotides PP_5253 and PP_5254 are separated by 40 nucleotides PP_5254 and PP_5255 are separated by 87 nucleotides
PP_5252: PP_5252 - conserved exported protein of unknown function, at 5,995,049 to 5,997,031
_5252
PP_5253: PP_5253 - Arylesterase, at 5,997,231 to 5,998,049
_5253
PP_5254: PP_5254 - conserved protein of unknown function, at 5,998,090 to 5,998,428
_5254
PP_5255: PP_5255 - putative hydrolase, at 5,998,516 to 5,999,145
_5255
Position (kb) 5997
5998
5999 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5996.268 kb on + strand, within PP_5252 at 5996.269 kb on - strand, within PP_5252 at 5996.284 kb on + strand, within PP_5252 at 5996.284 kb on + strand, within PP_5252 at 5996.285 kb on - strand, within PP_5252 at 5996.308 kb on - strand, within PP_5252 at 5996.538 kb on + strand, within PP_5252 at 5996.538 kb on + strand, within PP_5252 at 5996.539 kb on - strand, within PP_5252 at 5996.579 kb on - strand, within PP_5252 at 5996.661 kb on + strand, within PP_5252 at 5996.661 kb on + strand, within PP_5252 at 5996.662 kb on - strand, within PP_5252 at 5997.187 kb on - strand at 5997.198 kb on - strand at 5997.233 kb on - strand at 5997.310 kb on + strand at 5997.310 kb on + strand at 5997.311 kb on - strand at 5997.311 kb on - strand at 5997.311 kb on - strand at 5997.311 kb on - strand at 5997.311 kb on - strand at 5997.738 kb on - strand, within PP_5253 at 5997.739 kb on + strand, within PP_5253 at 5997.740 kb on - strand, within PP_5253 at 5997.842 kb on - strand, within PP_5253 at 5997.842 kb on - strand, within PP_5253 at 5998.012 kb on + strand at 5998.012 kb on + strand at 5998.012 kb on + strand at 5998.050 kb on - strand at 5998.055 kb on + strand at 5998.056 kb on - strand at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.140 kb on - strand, within PP_5254 at 5998.140 kb on - strand, within PP_5254 at 5998.140 kb on - strand, within PP_5254 at 5998.274 kb on + strand, within PP_5254 at 5998.274 kb on + strand, within PP_5254 at 5998.274 kb on + strand, within PP_5254 at 5998.357 kb on + strand, within PP_5254 at 5998.357 kb on + strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.518 kb on - strand at 5998.518 kb on - strand at 5998.541 kb on + strand at 5998.542 kb on - strand at 5998.786 kb on + strand, within PP_5255 at 5998.787 kb on - strand, within PP_5255 at 5998.788 kb on - strand, within PP_5255 at 5998.901 kb on + strand, within PP_5255 at 5998.901 kb on + strand, within PP_5255 at 5998.974 kb on + strand, within PP_5255 at 5998.974 kb on + strand, within PP_5255 at 5998.975 kb on - strand, within PP_5255 at 5998.975 kb on - strand, within PP_5255
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,996,268 + PP_5252 0.61 -1.1 5,996,269 - PP_5252 0.62 -0.1 5,996,284 + PP_5252 0.62 +0.6 5,996,284 + PP_5252 0.62 +0.6 5,996,285 - PP_5252 0.62 +0.4 5,996,308 - PP_5252 0.63 -0.2 5,996,538 + PP_5252 0.75 -0.4 5,996,538 + PP_5252 0.75 +0.5 5,996,539 - PP_5252 0.75 -1.4 5,996,579 - PP_5252 0.77 -0.4 5,996,661 + PP_5252 0.81 +0.6 5,996,661 + PP_5252 0.81 -0.7 5,996,662 - PP_5252 0.81 -0.8 5,997,187 - +0.3 5,997,198 - +1.0 5,997,233 - +1.3 5,997,310 + +0.8 5,997,310 + -0.3 5,997,311 - +0.5 5,997,311 - -0.6 5,997,311 - -0.7 5,997,311 - +0.8 5,997,311 - +1.0 5,997,738 - PP_5253 0.62 -1.2 5,997,739 + PP_5253 0.62 -0.9 5,997,740 - PP_5253 0.62 +0.1 5,997,842 - PP_5253 0.75 +0.1 5,997,842 - PP_5253 0.75 -1.4 5,998,012 + -0.8 5,998,012 + -0.1 5,998,012 + +0.8 5,998,050 - -0.2 5,998,055 + +0.9 5,998,056 - -0.4 5,998,139 + PP_5254 0.14 -0.7 5,998,139 + PP_5254 0.14 +0.8 5,998,139 + PP_5254 0.14 -0.8 5,998,139 + PP_5254 0.14 +0.0 5,998,139 + PP_5254 0.14 +1.4 5,998,140 - PP_5254 0.15 -0.1 5,998,140 - PP_5254 0.15 -0.9 5,998,140 - PP_5254 0.15 +0.4 5,998,274 + PP_5254 0.54 -2.1 5,998,274 + PP_5254 0.54 +1.8 5,998,274 + PP_5254 0.54 +1.1 5,998,357 + PP_5254 0.79 +0.9 5,998,357 + PP_5254 0.79 +0.2 5,998,358 - PP_5254 0.79 +0.8 5,998,358 - PP_5254 0.79 -0.4 5,998,358 - PP_5254 0.79 -0.5 5,998,358 - PP_5254 0.79 +0.2 5,998,358 - PP_5254 0.79 -1.8 5,998,464 - +1.2 5,998,464 - -0.8 5,998,464 - -1.4 5,998,464 - +0.0 5,998,464 - -0.9 5,998,518 - -1.5 5,998,518 - -0.1 5,998,541 + -1.3 5,998,542 - -0.5 5,998,786 + PP_5255 0.43 +0.5 5,998,787 - PP_5255 0.43 -1.1 5,998,788 - PP_5255 0.43 +0.8 5,998,901 + PP_5255 0.61 -0.3 5,998,901 + PP_5255 0.61 +0.5 5,998,974 + PP_5255 0.73 +0.5 5,998,974 + PP_5255 0.73 -2.5 5,998,975 - PP_5255 0.73 +0.7 5,998,975 - PP_5255 0.73 +1.0
Or see this region's nucleotide sequence