Strain Fitness in Pseudomonas putida KT2440 around PP_5242

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,978,559	+		PP_5241	0.44	+0.4
5,978,559	+		PP_5241	0.44	+0.6
5,979,188	+				+2.3
5,979,188	+				+0.3
5,979,200	+				+1.6
5,979,200	+				+0.6
5,979,201	-				+0.1
5,979,219	+				-0.1
5,979,219	+				-0.3
5,979,219	+				+1.1
5,979,219	+				-2.8
5,979,220	-				+0.1
5,979,220	-				-0.4
5,979,220	-				-0.8
5,979,317	+				-1.2
5,979,319	+				-0.5
5,979,355	+				-0.1
5,979,355	+				+0.0
5,979,356	-				-0.1
5,979,356	-				-0.1
5,979,356	-				-0.7
5,979,393	-				-1.6
5,979,467	+				+0.4
5,979,468	-				+0.3
5,979,642	-				+0.9
5,979,770	-				+0.2
5,979,791	+				-0.1
5,979,791	+				-0.2
5,979,791	+				-0.5
5,979,792	-				+2.5
5,979,887	+		PP_5242	0.11	-0.4
5,979,919	+		PP_5242	0.11	-0.7
5,979,947	+		PP_5242	0.12	-0.7
5,979,947	+		PP_5242	0.12	+0.0
5,979,947	+		PP_5242	0.12	-1.2
5,979,947	+		PP_5242	0.12	-0.7
5,979,947	+		PP_5242	0.12	-0.2
5,979,948	-		PP_5242	0.12	+0.1
5,979,948	-		PP_5242	0.12	+0.1
5,979,948	-		PP_5242	0.12	-0.4
5,979,948	-		PP_5242	0.12	-0.5
5,979,968	+		PP_5242	0.12	-0.5
5,979,969	-		PP_5242	0.12	+0.8
5,979,975	+		PP_5242	0.12	+0.3
5,979,975	+		PP_5242	0.12	-0.7
5,979,975	+		PP_5242	0.12	-0.7
5,979,976	-		PP_5242	0.12	-1.1
5,979,981	+		PP_5242	0.12	-1.1
5,980,137	-		PP_5242	0.15	-0.8
5,980,288	+		PP_5242	0.18	-0.3
5,980,412	+		PP_5242	0.21	+2.2
5,980,458	-		PP_5242	0.22	-1.3
5,980,458	-		PP_5242	0.22	-1.6
5,980,476	+		PP_5242	0.22	+0.0
5,980,476	+		PP_5242	0.22	-0.1
5,980,476	+		PP_5242	0.22	+0.2
5,980,493	-		PP_5242	0.23	-0.4
5,980,513	+		PP_5242	0.23	-1.4
5,980,513	+		PP_5242	0.23	-0.4
5,980,514	-		PP_5242	0.23	-1.1
5,980,514	-		PP_5242	0.23	-0.2
5,980,630	-		PP_5242	0.25	+0.8
5,980,864	-		PP_5242	0.30	-0.9
5,981,121	-		PP_5242	0.35	+0.2
5,981,398	+		PP_5242	0.40	+0.5
5,981,399	-		PP_5242	0.40	-1.1
5,981,470	-		PP_5242	0.42	+0.8
5,981,792	+		PP_5242	0.48	-0.4
5,981,792	+		PP_5242	0.48	-0.9
5,981,793	-		PP_5242	0.48	-0.4
5,981,850	+		PP_5242	0.49	+0.0
5,981,850	+		PP_5242	0.49	-0.2
5,981,851	-		PP_5242	0.49	-1.4
5,981,856	+		PP_5242	0.50	-0.6
5,982,081	+		PP_5242	0.54	+0.2
5,982,110	+		PP_5242	0.55	+0.6
5,982,110	+		PP_5242	0.55	-0.7
5,982,125	+		PP_5242	0.55	-0.3
5,982,158	+		PP_5242	0.55	-0.8
5,982,158	+		PP_5242	0.55	-0.5
5,982,158	+		PP_5242	0.55	+0.4
5,982,353	+		PP_5242	0.59	-1.5
5,982,354	-		PP_5242	0.59	-2.0
5,982,354	-		PP_5242	0.59	-0.7
5,982,444	+		PP_5242	0.61	-1.5
5,982,445	-		PP_5242	0.61	+0.2
5,982,445	-		PP_5242	0.61	+0.0
5,982,602	+		PP_5242	0.64	-0.1
5,982,602	+		PP_5242	0.64	-0.6
5,982,602	+		PP_5242	0.64	-0.5
5,982,603	-		PP_5242	0.64	-1.3
5,982,614	-		PP_5242	0.65	-0.6
5,982,614	-		PP_5242	0.65	-2.4
5,982,692	+		PP_5242	0.66	-0.7
5,982,693	-		PP_5242	0.66	-0.7
5,982,838	-		PP_5242	0.69	-0.4
5,982,838	-		PP_5242	0.69	-0.1
5,983,118	+		PP_5242	0.75	+0.6
5,983,119	-				+1.6
5,983,272	+		PP_5242	0.78	-0.7
5,983,273	-		PP_5242	0.78	+0.2
5,983,273	-		PP_5242	0.78	+0.7
5,983,273	-		PP_5242	0.78	+0.2
5,983,273	-		PP_5242	0.78	-0.0
5,983,307	+		PP_5242	0.78	-0.5
5,983,536	-		PP_5242	0.83	+1.0
5,983,623	+		PP_5242	0.85	+0.4
5,983,624	-		PP_5242	0.85	+0.6
5,983,641	-		PP_5242	0.85	-0.3
5,984,110	+				+0.1
5,984,164	+				-0.0
5,984,248	-				-0.4
5,984,263	+				-2.6
5,984,263	+				-2.6
5,984,264	-				+0.6
5,984,305	+				-0.2
5,984,305	+				+0.1
5,984,306	-				+0.0
5,984,403	-				-0.5
5,984,403	-				-1.3
5,984,439	+				-0.3
5,984,451	+				-0.2
5,984,481	+				-0.8
5,984,481	+				+0.1
5,984,482	-				+1.1
5,984,482	-				+0.2
5,984,489	+				+1.2
5,984,489	+				-0.8
5,984,490	-				+1.1
5,984,515	+				+1.1
5,984,516	-				-0.7
5,984,658	+		PP_5243	0.26	-0.1
5,984,658	+		PP_5243	0.26	-0.2
5,984,875	+		PP_5243	0.61	+0.1
5,984,875	+		PP_5243	0.61	-2.4
5,984,876	-		PP_5243	0.61	-0.5
5,985,103	+				+0.4
5,985,103	+				+0.4
5,985,103	+				-0.7
5,985,171	+				+0.3
5,985,171	+				-0.5
5,985,182	-				+1.1
5,985,193	-				-0.4
5,985,308	-		PP_5244	0.29	-0.9
5,985,308	-		PP_5244	0.29	-0.0