Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5047 and PP_5048 overlap by 4 nucleotides PP_5048 and PP_5050 are separated by 687 nucleotides
PP_5047: PP_5047 - two-component system sensory histidine kinase/phosphatase GlnL/GlnG, at 5,753,805 to 5,754,890
_5047
PP_5048: PP_5048 - two-component system DNA-binding transcriptional dual regulator GlnL/GlnG, at 5,754,887 to 5,756,323
_5048
PP_5050: PP_5050 - transposase, at 5,757,011 to 5,757,976
_5050
Position (kb) 5754
5755
5756
5757 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5753.892 kb on + strand at 5753.892 kb on + strand at 5753.892 kb on + strand at 5753.893 kb on - strand at 5754.050 kb on + strand, within PP_5047 at 5754.051 kb on - strand, within PP_5047 at 5754.092 kb on - strand, within PP_5047 at 5754.274 kb on + strand, within PP_5047 at 5754.312 kb on + strand, within PP_5047 at 5754.313 kb on - strand, within PP_5047 at 5754.313 kb on - strand, within PP_5047 at 5754.407 kb on + strand, within PP_5047 at 5754.729 kb on + strand, within PP_5047 at 5754.729 kb on + strand, within PP_5047 at 5754.729 kb on + strand, within PP_5047 at 5754.729 kb on + strand, within PP_5047 at 5754.730 kb on - strand, within PP_5047 at 5754.779 kb on + strand, within PP_5047 at 5754.855 kb on + strand at 5754.855 kb on + strand at 5754.855 kb on + strand at 5754.856 kb on - strand at 5754.856 kb on - strand at 5754.856 kb on - strand at 5754.907 kb on - strand at 5755.169 kb on + strand, within PP_5048 at 5755.170 kb on - strand, within PP_5048 at 5755.170 kb on - strand, within PP_5048 at 5755.170 kb on - strand, within PP_5048 at 5755.170 kb on - strand, within PP_5048 at 5755.190 kb on + strand, within PP_5048 at 5755.674 kb on - strand, within PP_5048 at 5755.805 kb on - strand, within PP_5048 at 5755.810 kb on + strand, within PP_5048 at 5755.811 kb on - strand, within PP_5048 at 5755.811 kb on - strand, within PP_5048 at 5755.811 kb on - strand, within PP_5048 at 5756.333 kb on + strand at 5756.334 kb on - strand at 5756.524 kb on - strand at 5756.564 kb on + strand at 5756.564 kb on + strand at 5756.565 kb on - strand at 5756.579 kb on - strand at 5756.579 kb on - strand at 5756.579 kb on - strand at 5756.656 kb on + strand at 5756.657 kb on - strand at 5756.678 kb on + strand at 5756.678 kb on + strand at 5756.678 kb on + strand at 5756.679 kb on - strand at 5756.711 kb on - strand at 5756.811 kb on - strand at 5756.811 kb on - strand at 5756.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,753,892 + +0.0 5,753,892 + +0.5 5,753,892 + -1.9 5,753,893 - +0.4 5,754,050 + PP_5047 0.23 -0.1 5,754,051 - PP_5047 0.23 -2.9 5,754,092 - PP_5047 0.26 -1.3 5,754,274 + PP_5047 0.43 -1.3 5,754,312 + PP_5047 0.47 +0.1 5,754,313 - PP_5047 0.47 -0.4 5,754,313 - PP_5047 0.47 +0.7 5,754,407 + PP_5047 0.55 +0.7 5,754,729 + PP_5047 0.85 -0.1 5,754,729 + PP_5047 0.85 +0.9 5,754,729 + PP_5047 0.85 +0.2 5,754,729 + PP_5047 0.85 +0.3 5,754,730 - PP_5047 0.85 +0.1 5,754,779 + PP_5047 0.90 -0.9 5,754,855 + -1.4 5,754,855 + -1.1 5,754,855 + -3.8 5,754,856 - -1.8 5,754,856 - -1.0 5,754,856 - -1.0 5,754,907 - +0.5 5,755,169 + PP_5048 0.20 -0.4 5,755,170 - PP_5048 0.20 -0.9 5,755,170 - PP_5048 0.20 -2.2 5,755,170 - PP_5048 0.20 -0.8 5,755,170 - PP_5048 0.20 -0.9 5,755,190 + PP_5048 0.21 -0.7 5,755,674 - PP_5048 0.55 -0.2 5,755,805 - PP_5048 0.64 -0.7 5,755,810 + PP_5048 0.64 -0.4 5,755,811 - PP_5048 0.64 -0.3 5,755,811 - PP_5048 0.64 -1.5 5,755,811 - PP_5048 0.64 -0.8 5,756,333 + +1.7 5,756,334 - +0.2 5,756,524 - -0.5 5,756,564 + -2.6 5,756,564 + -0.9 5,756,565 - -0.6 5,756,579 - -0.9 5,756,579 - -0.0 5,756,579 - -0.3 5,756,656 + +0.0 5,756,657 - +0.3 5,756,678 + -4.9 5,756,678 + +0.6 5,756,678 + -0.5 5,756,679 - +2.9 5,756,711 - -0.7 5,756,811 - +0.5 5,756,811 - -0.4 5,756,816 - -0.8
Or see this region's nucleotide sequence