Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4988 and PP_4989 are separated by 12 nucleotides PP_4989 and PP_4990 are separated by 11 nucleotides PP_4990 and PP_4991 overlap by 4 nucleotides PP_4991 and PP_4992 are separated by 47 nucleotides
PP_4988: PP_4988 - signal transduction histidine kinase CheA/CheY-like receiver, at 5,681,952 to 5,686,892
_4988
PP_4989: PP_4989 - Protein PilJ, at 5,686,905 to 5,688,965
_4989
PP_4990: PP_4990 - Protein PilI, at 5,688,977 to 5,689,531
_4990
PP_4991: PP_4991 - Protein PilH, at 5,689,528 to 5,689,893
_4991
PP_4992: PP_4992 - Protein PilG, at 5,689,941 to 5,690,342
_4992
Position (kb) 5686
5687
5688
5689 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5686.088 kb on - strand, within PP_4988 at 5686.878 kb on + strand at 5686.879 kb on - strand at 5686.900 kb on - strand at 5687.112 kb on + strand, within PP_4989 at 5687.114 kb on + strand at 5687.256 kb on - strand, within PP_4989 at 5687.594 kb on - strand, within PP_4989 at 5687.791 kb on + strand, within PP_4989 at 5687.792 kb on - strand, within PP_4989 at 5688.013 kb on + strand, within PP_4989 at 5688.014 kb on - strand, within PP_4989 at 5688.014 kb on - strand, within PP_4989 at 5688.670 kb on + strand, within PP_4989 at 5688.671 kb on - strand, within PP_4989 at 5688.805 kb on + strand at 5688.805 kb on + strand at 5688.806 kb on - strand at 5688.806 kb on - strand at 5688.831 kb on - strand at 5688.839 kb on - strand at 5688.978 kb on + strand at 5688.979 kb on - strand at 5688.979 kb on - strand at 5688.979 kb on - strand at 5688.981 kb on - strand at 5689.328 kb on - strand, within PP_4990 at 5689.668 kb on + strand, within PP_4991 at 5689.851 kb on - strand, within PP_4991 at 5689.916 kb on - strand at 5689.916 kb on - strand at 5689.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,686,088 - PP_4988 0.84 +0.5 5,686,878 + -2.3 5,686,879 - -0.8 5,686,900 - +0.2 5,687,112 + PP_4989 0.10 -0.6 5,687,114 + +1.2 5,687,256 - PP_4989 0.17 -0.3 5,687,594 - PP_4989 0.33 -0.3 5,687,791 + PP_4989 0.43 +0.4 5,687,792 - PP_4989 0.43 -0.4 5,688,013 + PP_4989 0.54 -2.5 5,688,014 - PP_4989 0.54 -1.9 5,688,014 - PP_4989 0.54 -2.5 5,688,670 + PP_4989 0.86 -1.3 5,688,671 - PP_4989 0.86 +0.5 5,688,805 + +0.1 5,688,805 + -2.4 5,688,806 - -0.6 5,688,806 - -1.1 5,688,831 - -2.5 5,688,839 - -1.9 5,688,978 + -2.5 5,688,979 - +0.0 5,688,979 - -0.0 5,688,979 - +0.0 5,688,981 - -1.4 5,689,328 - PP_4990 0.63 +0.5 5,689,668 + PP_4991 0.38 +0.9 5,689,851 - PP_4991 0.88 -2.0 5,689,916 - -0.4 5,689,916 - -1.0 5,689,916 - -3.3
Or see this region's nucleotide sequence