Strain Fitness in Pseudomonas putida KT2440 around PP_4964

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4963 and PP_4964 are separated by 12 nucleotidesPP_4964 and PP_4965 are separated by 151 nucleotides PP_4963: PP_4963 - Phosphoglycerate kinase, at 5,653,311 to 5,654,474 _4963 PP_4964: PP_4964 - D-erythrose 4-phosphate dehydrogenase, at 5,654,487 to 5,655,545 _4964 PP_4965: PP_4965 - transketolase A, at 5,655,697 to 5,657,694 _4965 Position (kb) 5654 5655 5656Strain fitness (log2 ratio) -2 -1 0 1 2at 5654.818 kb on - strand, within PP_4964at 5654.824 kb on - strand, within PP_4964at 5654.951 kb on - strand, within PP_4964at 5655.007 kb on + strand, within PP_4964at 5655.007 kb on + strand, within PP_4964at 5655.007 kb on + strand, within PP_4964at 5655.008 kb on - strand, within PP_4964at 5655.008 kb on - strand, within PP_4964at 5655.227 kb on + strand, within PP_4964at 5655.228 kb on - strand, within PP_4964at 5655.229 kb on + strand, within PP_4964at 5655.229 kb on + strand, within PP_4964at 5655.229 kb on + strand, within PP_4964at 5655.230 kb on - strand, within PP_4964at 5655.306 kb on + strand, within PP_4964

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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5,654,818 - PP_4964 0.31 -2.5
5,654,824 - PP_4964 0.32 -1.4
5,654,951 - PP_4964 0.44 -0.6
5,655,007 + PP_4964 0.49 +1.4
5,655,007 + PP_4964 0.49 -0.2
5,655,007 + PP_4964 0.49 -2.1
5,655,008 - PP_4964 0.49 -2.2
5,655,008 - PP_4964 0.49 +0.7
5,655,227 + PP_4964 0.70 -0.6
5,655,228 - PP_4964 0.70 -1.1
5,655,229 + PP_4964 0.70 -0.3
5,655,229 + PP_4964 0.70 -1.9
5,655,229 + PP_4964 0.70 +2.0
5,655,230 - PP_4964 0.70 -0.5
5,655,306 + PP_4964 0.77 -0.9

Or see this region's nucleotide sequence