Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4943 and PP_4944 overlap by 17 nucleotides PP_4944 and PP_4945 are separated by 192 nucleotides
PP_4943: PP_4943 - putative Glycosyl transferase, at 5,624,630 to 5,625,760
_4943
PP_4944: PP_4944 - Carbamoyltransferase, at 5,625,744 to 5,627,501
_4944
PP_4945: PP_4945 - 23S rRNA m(6)A2030 methyltransferase, at 5,627,694 to 5,628,530
_4945
Position (kb) 5625
5626
5627
5628 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5624.962 kb on - strand, within PP_4943 at 5625.262 kb on - strand, within PP_4943 at 5625.457 kb on - strand, within PP_4943 at 5625.639 kb on - strand, within PP_4943 at 5625.809 kb on - strand at 5625.944 kb on - strand, within PP_4944 at 5625.959 kb on - strand, within PP_4944 at 5626.598 kb on - strand, within PP_4944 at 5626.664 kb on - strand, within PP_4944 at 5626.664 kb on - strand, within PP_4944 at 5626.664 kb on - strand, within PP_4944 at 5626.730 kb on - strand, within PP_4944 at 5626.730 kb on - strand, within PP_4944 at 5626.730 kb on - strand, within PP_4944 at 5626.928 kb on - strand, within PP_4944 at 5627.075 kb on - strand, within PP_4944 at 5627.252 kb on - strand, within PP_4944 at 5627.508 kb on - strand at 5627.574 kb on - strand at 5627.608 kb on + strand at 5627.609 kb on - strand at 5627.658 kb on + strand at 5627.695 kb on + strand at 5627.726 kb on + strand at 5627.860 kb on + strand, within PP_4945 at 5627.860 kb on + strand, within PP_4945 at 5627.860 kb on + strand, within PP_4945 at 5627.860 kb on + strand, within PP_4945 at 5627.861 kb on - strand, within PP_4945 at 5627.861 kb on - strand, within PP_4945 at 5627.861 kb on - strand, within PP_4945 at 5627.861 kb on - strand, within PP_4945 at 5627.861 kb on - strand, within PP_4945 at 5627.912 kb on - strand, within PP_4945 at 5627.912 kb on - strand, within PP_4945 at 5627.915 kb on - strand, within PP_4945 at 5628.185 kb on + strand, within PP_4945 at 5628.247 kb on + strand, within PP_4945 at 5628.248 kb on - strand, within PP_4945 at 5628.292 kb on + strand, within PP_4945 at 5628.293 kb on - strand, within PP_4945 at 5628.391 kb on + strand, within PP_4945 at 5628.391 kb on + strand, within PP_4945 at 5628.391 kb on + strand, within PP_4945 at 5628.391 kb on + strand, within PP_4945 at 5628.392 kb on - strand at 5628.392 kb on - strand, within PP_4945 at 5628.419 kb on + strand, within PP_4945 at 5628.421 kb on + strand, within PP_4945
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,624,962 - PP_4943 0.29 +0.3 5,625,262 - PP_4943 0.56 +0.8 5,625,457 - PP_4943 0.73 -0.0 5,625,639 - PP_4943 0.89 +1.6 5,625,809 - +0.7 5,625,944 - PP_4944 0.11 -0.8 5,625,959 - PP_4944 0.12 -2.4 5,626,598 - PP_4944 0.49 -1.8 5,626,664 - PP_4944 0.52 +1.5 5,626,664 - PP_4944 0.52 -2.6 5,626,664 - PP_4944 0.52 -1.3 5,626,730 - PP_4944 0.56 -0.7 5,626,730 - PP_4944 0.56 -0.6 5,626,730 - PP_4944 0.56 +0.4 5,626,928 - PP_4944 0.67 +0.1 5,627,075 - PP_4944 0.76 +1.2 5,627,252 - PP_4944 0.86 +2.0 5,627,508 - +0.6 5,627,574 - +0.7 5,627,608 + -0.2 5,627,609 - +0.7 5,627,658 + -0.1 5,627,695 + +0.0 5,627,726 + +2.5 5,627,860 + PP_4945 0.20 -2.2 5,627,860 + PP_4945 0.20 +2.0 5,627,860 + PP_4945 0.20 -1.1 5,627,860 + PP_4945 0.20 -1.9 5,627,861 - PP_4945 0.20 -0.8 5,627,861 - PP_4945 0.20 +0.2 5,627,861 - PP_4945 0.20 -2.0 5,627,861 - PP_4945 0.20 +0.3 5,627,861 - PP_4945 0.20 +1.0 5,627,912 - PP_4945 0.26 -0.4 5,627,912 - PP_4945 0.26 +0.4 5,627,915 - PP_4945 0.26 -0.1 5,628,185 + PP_4945 0.59 -1.1 5,628,247 + PP_4945 0.66 -1.2 5,628,248 - PP_4945 0.66 -0.7 5,628,292 + PP_4945 0.71 -0.6 5,628,293 - PP_4945 0.72 -2.4 5,628,391 + PP_4945 0.83 -0.2 5,628,391 + PP_4945 0.83 -1.5 5,628,391 + PP_4945 0.83 +0.9 5,628,391 + PP_4945 0.83 +0.2 5,628,392 - -1.1 5,628,392 - PP_4945 0.83 +0.1 5,628,419 + PP_4945 0.87 -0.5 5,628,421 + PP_4945 0.87 -0.4
Or see this region's nucleotide sequence