Strain Fitness in Pseudomonas putida KT2440 around PP_4937

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4936 and PP_4937 are separated by 100 nucleotidesPP_4937 and PP_4938 are separated by 3 nucleotides PP_4936: PP_4936 - O-antigen polymerase, at 5,617,476 to 5,618,651 _4936 PP_4937: PP_4937 - toluene tolerance protein, at 5,618,752 to 5,619,357 _4937 PP_4938: PP_4938 - putative Glycosyl transferase, at 5,619,361 to 5,620,500 _4938 Position (kb) 5618 5619 5620Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5617.810 kb on + strand, within PP_4936at 5617.810 kb on + strand, within PP_4936at 5617.918 kb on + strand, within PP_4936at 5617.919 kb on - strand, within PP_4936at 5617.919 kb on - strand, within PP_4936at 5618.015 kb on + strand, within PP_4936at 5618.016 kb on - strand, within PP_4936at 5618.129 kb on - strand, within PP_4936at 5618.161 kb on + strand, within PP_4936at 5618.161 kb on + strand, within PP_4936at 5618.161 kb on + strand, within PP_4936at 5618.161 kb on + strand, within PP_4936at 5618.161 kb on + strand, within PP_4936at 5618.162 kb on - strand, within PP_4936at 5618.162 kb on - strand, within PP_4936at 5618.162 kb on - strand, within PP_4936at 5618.162 kb on - strand, within PP_4936at 5618.162 kb on - strand, within PP_4936at 5618.162 kb on - strand, within PP_4936at 5618.184 kb on + strand, within PP_4936at 5618.295 kb on + strand, within PP_4936at 5618.295 kb on + strand, within PP_4936at 5618.296 kb on - strand, within PP_4936at 5618.363 kb on - strand, within PP_4936at 5618.363 kb on - strand, within PP_4936at 5618.363 kb on - strand, within PP_4936at 5618.514 kb on + strand, within PP_4936at 5618.515 kb on - strand, within PP_4936at 5618.616 kb on + strandat 5618.617 kb on - strandat 5618.644 kb on + strandat 5618.645 kb on - strandat 5618.690 kb on + strandat 5618.690 kb on + strandat 5618.690 kb on + strandat 5618.691 kb on - strandat 5618.691 kb on - strandat 5618.698 kb on + strandat 5618.710 kb on + strandat 5618.711 kb on - strandat 5618.711 kb on - strandat 5618.747 kb on + strandat 5618.748 kb on - strandat 5618.748 kb on - strandat 5618.843 kb on - strand, within PP_4937at 5618.909 kb on + strand, within PP_4937at 5618.910 kb on - strand, within PP_4937at 5618.917 kb on + strand, within PP_4937at 5619.028 kb on + strand, within PP_4937at 5619.028 kb on + strand, within PP_4937at 5619.029 kb on - strand, within PP_4937at 5619.094 kb on + strand, within PP_4937at 5619.095 kb on - strand, within PP_4937at 5619.095 kb on - strand, within PP_4937at 5619.286 kb on + strand, within PP_4937at 5619.287 kb on - strand, within PP_4937at 5619.287 kb on - strand, within PP_4937at 5619.287 kb on - strand, within PP_4937at 5619.469 kb on - strandat 5619.469 kb on - strandat 5619.519 kb on - strand, within PP_4938at 5619.577 kb on + strand, within PP_4938at 5619.634 kb on + strandat 5619.635 kb on - strand, within PP_4938at 5619.640 kb on + strand, within PP_4938at 5619.641 kb on - strand, within PP_4938at 5619.660 kb on - strand, within PP_4938at 5619.660 kb on - strand, within PP_4938at 5619.726 kb on + strand, within PP_4938at 5619.844 kb on + strand, within PP_4938at 5619.844 kb on + strand, within PP_4938at 5619.845 kb on - strand, within PP_4938at 5619.845 kb on - strand, within PP_4938at 5620.120 kb on + strand, within PP_4938at 5620.120 kb on + strand, within PP_4938at 5620.121 kb on - strand, within PP_4938at 5620.121 kb on - strand, within PP_4938at 5620.170 kb on + strand, within PP_4938at 5620.170 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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5,617,810 + PP_4936 0.28 -0.3
5,617,810 + PP_4936 0.28 -0.4
5,617,918 + PP_4936 0.38 +0.0
5,617,919 - PP_4936 0.38 +0.0
5,617,919 - PP_4936 0.38 -0.7
5,618,015 + PP_4936 0.46 +0.3
5,618,016 - PP_4936 0.46 -1.4
5,618,129 - PP_4936 0.56 +1.8
5,618,161 + PP_4936 0.58 +0.7
5,618,161 + PP_4936 0.58 +0.7
5,618,161 + PP_4936 0.58 +0.2
5,618,161 + PP_4936 0.58 -0.2
5,618,161 + PP_4936 0.58 +0.5
5,618,162 - PP_4936 0.58 +0.1
5,618,162 - PP_4936 0.58 +0.7
5,618,162 - PP_4936 0.58 +1.3
5,618,162 - PP_4936 0.58 -0.1
5,618,162 - PP_4936 0.58 +0.0
5,618,162 - PP_4936 0.58 +0.4
5,618,184 + PP_4936 0.60 +0.4
5,618,295 + PP_4936 0.70 -0.1
5,618,295 + PP_4936 0.70 +0.9
5,618,296 - PP_4936 0.70 +0.1
5,618,363 - PP_4936 0.75 +0.8
5,618,363 - PP_4936 0.75 +0.9
5,618,363 - PP_4936 0.75 -1.1
5,618,514 + PP_4936 0.88 -2.3
5,618,515 - PP_4936 0.88 +0.9
5,618,616 + +0.1
5,618,617 - +0.7
5,618,644 + +0.1
5,618,645 - -1.8
5,618,690 + -0.2
5,618,690 + -0.1
5,618,690 + +0.5
5,618,691 - -3.0
5,618,691 - -1.7
5,618,698 + +0.5
5,618,710 + -0.1
5,618,711 - -0.7
5,618,711 - -1.5
5,618,747 + -1.1
5,618,748 - -0.3
5,618,748 - -1.8
5,618,843 - PP_4937 0.15 -2.5
5,618,909 + PP_4937 0.26 -0.3
5,618,910 - PP_4937 0.26 -0.3
5,618,917 + PP_4937 0.27 -0.8
5,619,028 + PP_4937 0.46 -0.5
5,619,028 + PP_4937 0.46 -3.0
5,619,029 - PP_4937 0.46 -1.7
5,619,094 + PP_4937 0.56 -0.5
5,619,095 - PP_4937 0.57 +0.5
5,619,095 - PP_4937 0.57 -1.0
5,619,286 + PP_4937 0.88 -2.9
5,619,287 - PP_4937 0.88 -2.3
5,619,287 - PP_4937 0.88 -1.2
5,619,287 - PP_4937 0.88 -0.9
5,619,469 - -0.1
5,619,469 - +0.8
5,619,519 - PP_4938 0.14 +1.9
5,619,577 + PP_4938 0.19 +0.6
5,619,634 + +0.3
5,619,635 - PP_4938 0.24 +0.5
5,619,640 + PP_4938 0.24 +0.1
5,619,641 - PP_4938 0.25 +1.1
5,619,660 - PP_4938 0.26 +0.3
5,619,660 - PP_4938 0.26 -0.1
5,619,726 + PP_4938 0.32 +0.5
5,619,844 + PP_4938 0.42 +0.1
5,619,844 + PP_4938 0.42 +0.2
5,619,845 - PP_4938 0.42 -1.7
5,619,845 - PP_4938 0.42 +0.6
5,620,120 + PP_4938 0.67 +0.9
5,620,120 + PP_4938 0.67 -1.0
5,620,121 - PP_4938 0.67 -0.5
5,620,121 - PP_4938 0.67 +1.3
5,620,170 + PP_4938 0.71 +0.8
5,620,170 + PP_4938 0.71 +0.1
5,620,287 + PP_4938 0.81 +1.3
5,620,287 + PP_4938 0.81 +0.7
5,620,287 + PP_4938 0.81 -0.2
5,620,287 + PP_4938 0.81 -1.0
5,620,287 + PP_4938 0.81 -0.2
5,620,287 + PP_4938 0.81 +1.0
5,620,287 + PP_4938 0.81 +0.7
5,620,287 + PP_4938 0.81 -0.9
5,620,288 - PP_4938 0.81 -1.0
5,620,288 - PP_4938 0.81 -0.5
5,620,288 - PP_4938 0.81 +1.0
5,620,288 - PP_4938 0.81 +0.7
5,620,288 - PP_4938 0.81 -0.4
5,620,288 - PP_4938 0.81 +0.2
5,620,288 - PP_4938 0.81 -0.1
5,620,288 - PP_4938 0.81 +0.1

Or see this region's nucleotide sequence