Strain Fitness in Pseudomonas putida KT2440 around PP_4909

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,579,569	-				-0.7
5,579,569	-				+0.9
5,579,569	-				+1.5
5,579,654	+				+0.8
5,579,655	-				-2.4
5,579,927	+		PP_4909	0.25	-1.7
5,579,927	+		PP_4909	0.25	-1.8
5,579,927	+		PP_4909	0.25	-0.8
5,579,927	+		PP_4909	0.25	-1.0
5,579,928	-		PP_4909	0.25	+1.0
5,579,928	-		PP_4909	0.25	+0.2
5,579,928	-		PP_4909	0.25	-1.1
5,579,966	+		PP_4909	0.28	+0.5
5,579,966	+		PP_4909	0.28	-0.8
5,579,966	+		PP_4909	0.28	+1.1
5,579,966	+		PP_4909	0.28	-0.9
5,579,967	-		PP_4909	0.28	-3.3
5,579,967	-		PP_4909	0.28	-1.7
5,579,967	-		PP_4909	0.28	-1.4
5,579,967	-		PP_4909	0.28	-0.7
5,579,970	+		PP_4909	0.28	-0.8
5,579,999	+		PP_4909	0.31	-1.2
5,580,000	-		PP_4909	0.31	-0.0
5,580,000	-		PP_4909	0.31	+0.7
5,580,467	+		PP_4909	0.68	-1.1
5,580,538	-		PP_4909	0.74	-1.8
5,580,576	-		PP_4909	0.77	-0.5
5,580,576	-		PP_4909	0.77	+1.3
5,580,600	-		PP_4909	0.79	-0.3
5,580,738	+		PP_4909	0.90	-2.7
5,580,867	+				+0.3
5,580,951	+				-0.3
5,580,951	+				-1.7
5,581,857	+		PP_4910	0.61	+1.1
5,581,857	+		PP_4910	0.61	-0.7