Strain Fitness in Pseudomonas putida KT2440 around PP_4902

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,571,535	+				+0.2
5,571,641	-		PP_4901	0.20	+0.7
5,571,688	+		PP_4901	0.28	+0.4
5,571,689	-		PP_4901	0.28	-0.2
5,571,689	-		PP_4901	0.28	+0.6
5,571,689	-		PP_4901	0.28	-0.5
5,571,732	-		PP_4901	0.35	-1.0
5,571,825	+		PP_4901	0.50	+0.1
5,571,825	+		PP_4901	0.50	+0.0
5,571,825	+		PP_4901	0.50	-0.7
5,571,825	+		PP_4901	0.50	-0.4
5,571,826	-		PP_4901	0.50	+1.6
5,571,944	-		PP_4901	0.69	+0.6
5,572,114	+				-0.3
5,572,115	-				-1.6
5,572,163	+				+0.6
5,572,164	-				-0.7
5,572,199	+				+1.2
5,572,199	+				-0.3
5,572,199	+				-0.5
5,572,199	+				-0.3
5,572,200	-				+0.3
5,572,204	+				-0.4
5,572,204	+				+0.1
5,572,204	+				+0.2
5,572,204	+				-0.2
5,572,205	-				+0.9
5,572,205	-				-2.5
5,572,205	-				-1.0
5,572,205	-				+1.0
5,572,205	-				-0.2
5,572,299	+		PP_4902	0.14	-1.9
5,572,419	-		PP_4902	0.36	-2.2
5,572,474	-		PP_4902	0.46	-3.2
5,572,653	+		PP_4902	0.79	-2.4
5,572,653	+		PP_4902	0.79	-1.3
5,572,653	+		PP_4902	0.79	-3.6
5,572,654	-		PP_4902	0.80	-0.6
5,572,654	-		PP_4902	0.80	-0.6
5,572,779	+				-0.1
5,572,779	+				-1.9
5,572,780	-				-0.4
5,572,780	-				-0.4
5,572,780	-				-0.1
5,572,780	-				+1.1
5,572,780	-				-1.1
5,572,780	-				-0.2
5,572,780	-				+0.5
5,572,781	+				-1.5
5,572,781	+				-2.6
5,572,782	-				+1.4
5,572,782	-				-0.2
5,572,782	-				-1.4
5,572,791	+				-0.0
5,572,791	+				-0.2
5,572,791	+				+0.7
5,572,791	+				+0.4
5,572,791	+				+0.0
5,572,792	-				-0.9
5,572,794	+				-0.2
5,572,799	+				-0.9
5,572,799	+				+1.1
5,572,800	-				-0.4
5,572,800	-				+1.2
5,572,800	-				-1.3
5,572,800	-				-0.9
5,572,843	+				-1.8
5,572,843	+				+0.1
5,572,844	-				-1.1
5,572,905	+				-1.4