Strain Fitness in Pseudomonas putida KT2440 around PP_4895

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,563,628	+		PP_4893	0.52	+0.4
5,563,628	+		PP_4893	0.52	+0.0
5,563,628	+		PP_4893	0.52	-1.0
5,563,629	-		PP_4893	0.53	-0.2
5,563,629	-		PP_4893	0.53	+0.9
5,563,629	-		PP_4893	0.53	+1.5
5,563,629	-		PP_4893	0.53	-1.6
5,563,629	-		PP_4893	0.53	+1.6
5,563,629	-		PP_4893	0.53	+0.5
5,563,630	+		PP_4893	0.53	+1.5
5,563,630	+		PP_4893	0.53	-1.9
5,563,630	+		PP_4893	0.53	+0.5
5,563,631	-		PP_4893	0.53	-0.4
5,563,731	+		PP_4893	0.60	+1.1
5,563,731	+		PP_4893	0.60	+0.1
5,563,731	+		PP_4893	0.60	+0.4
5,563,732	-		PP_4893	0.60	-3.4
5,563,733	+		PP_4893	0.61	-0.7
5,563,733	+		PP_4893	0.61	+0.1
5,563,734	-		PP_4893	0.61	-1.6
5,563,734	-		PP_4893	0.61	+0.7
5,563,734	-		PP_4893	0.61	-0.1
5,563,917	-		PP_4893	0.75	-0.2
5,564,019	+		PP_4893	0.82	-3.1
5,564,077	+		PP_4893	0.87	+0.1
5,564,078	-		PP_4893	0.87	-0.8
5,564,257	+				+0.1
5,564,799	-		PP_4895	0.19	-0.9
5,564,985	-		PP_4895	0.38	+0.4
5,565,080	-		PP_4895	0.48	-3.0
5,565,080	-		PP_4895	0.48	-0.6
5,565,080	-		PP_4895	0.48	-1.1
5,565,124	-		PP_4895	0.52	-1.4
5,565,266	+		PP_4895	0.67	-1.3
5,565,266	+		PP_4895	0.67	+0.2
5,565,266	+		PP_4895	0.67	-0.4
5,565,267	-		PP_4895	0.67	-2.8
5,565,267	-		PP_4895	0.67	-2.2
5,565,267	-		PP_4895	0.67	-0.1
5,565,267	-		PP_4895	0.67	-2.3
5,565,365	+		PP_4895	0.77	-1.1
5,565,365	+		PP_4895	0.77	-1.6
5,565,366	-		PP_4895	0.77	-2.4
5,565,562	+				-0.3
5,565,562	+				-2.5
5,565,684	+				-2.4
5,565,810	+		PP_4896	0.12	+0.3
5,565,810	+		PP_4896	0.12	+1.3
5,565,818	-		PP_4896	0.12	-1.6
5,566,059	+		PP_4896	0.25	+0.1
5,566,059	+		PP_4896	0.25	+0.7
5,566,059	+		PP_4896	0.25	-1.1
5,566,060	-		PP_4896	0.25	-0.4
5,566,064	+		PP_4896	0.25	+0.3
5,566,128	+		PP_4896	0.28	+0.2
5,566,128	+		PP_4896	0.28	-0.1
5,566,128	+		PP_4896	0.28	-1.0
5,566,128	+		PP_4896	0.28	-0.0
5,566,128	+		PP_4896	0.28	-0.8
5,566,129	-		PP_4896	0.29	-0.7
5,566,129	-		PP_4896	0.29	+1.7
5,566,129	-		PP_4896	0.29	+0.3
5,566,129	-		PP_4896	0.29	-3.7
5,566,129	-		PP_4896	0.29	-1.4
5,566,132	+		PP_4896	0.29	-0.1
5,566,132	+		PP_4896	0.29	-1.0
5,566,133	-		PP_4896	0.29	+0.1
5,566,133	-		PP_4896	0.29	-1.0
5,566,133	-		PP_4896	0.29	-0.1
5,566,155	+		PP_4896	0.30	-1.9
5,566,155	+		PP_4896	0.30	-1.6
5,566,155	+		PP_4896	0.30	-0.3
5,566,156	-		PP_4896	0.30	-0.4
5,566,156	-		PP_4896	0.30	-0.8
5,566,156	-		PP_4896	0.30	+0.2
5,566,160	+		PP_4896	0.30	+2.1
5,566,228	+		PP_4896	0.34	-0.2
5,566,228	+		PP_4896	0.34	+0.4
5,566,229	-		PP_4896	0.34	-1.9
5,566,229	-		PP_4896	0.34	+0.1
5,566,230	+		PP_4896	0.34	+0.2
5,566,230	+		PP_4896	0.34	-0.8
5,566,231	-		PP_4896	0.34	-0.4
5,566,293	+		PP_4896	0.37	-0.1
5,566,293	+		PP_4896	0.37	-0.0
5,566,293	+		PP_4896	0.37	-2.1
5,566,293	+		PP_4896	0.37	-1.4
5,566,293	+		PP_4896	0.37	-2.7
5,566,293	+		PP_4896	0.37	+0.8
5,566,294	-		PP_4896	0.37	+0.3
5,566,442	+		PP_4896	0.45	+0.2
5,566,442	+		PP_4896	0.45	-0.1
5,566,478	+		PP_4896	0.47	+1.1
5,566,479	-		PP_4896	0.47	-1.9
5,566,479	-		PP_4896	0.47	+0.5
5,566,547	+		PP_4896	0.51	+0.0
5,566,548	-		PP_4896	0.51	+1.2
5,566,548	-		PP_4896	0.51	-1.4