Strain Fitness in Pseudomonas putida KT2440 around PP_4874

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,542,803	+				+1.1
5,542,804	-				-0.9
5,542,804	-				+0.3
5,542,813	+				-0.4
5,542,815	-				-1.7
5,542,821	+				-1.4
5,542,837	-				-3.2
5,542,837	-				-0.0
5,542,872	+		PP_4874	0.13	+0.7
5,542,873	-		PP_4874	0.14	-1.6
5,542,879	+		PP_4874	0.15	+1.4
5,543,195	+		PP_4874	0.86	-2.3
5,543,409	+		PP_4875	0.15	-0.8
5,543,409	+		PP_4875	0.15	-0.9
5,543,409	+		PP_4875	0.15	-0.0
5,543,410	-		PP_4875	0.15	-0.8
5,543,410	-		PP_4875	0.15	+0.7
5,543,410	-		PP_4875	0.15	-3.3
5,543,410	-		PP_4875	0.15	-0.0
5,543,410	-		PP_4875	0.15	-0.0
5,543,410	-		PP_4875	0.15	-1.6
5,543,410	-		PP_4875	0.15	-1.4
5,543,410	-		PP_4875	0.15	-0.9
5,543,628	+		PP_4875	0.40	-2.9
5,543,647	-		PP_4875	0.43	+1.3