Strain Fitness in Pseudomonas putida KT2440 around PP_4824

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,486,534	+				-0.4
5,486,534	+				-0.2
5,486,534	+				-0.9
5,486,535	-				-0.0
5,486,535	-				+0.4
5,486,535	-				-0.9
5,486,535	-				+0.9
5,486,535	-				+0.2
5,486,538	+				+0.2
5,486,538	+				-0.4
5,486,538	+				+0.4
5,486,538	+				-1.1
5,486,538	+				+0.0
5,486,539	-				+0.2
5,486,539	-				-1.1
5,486,539	-				-1.2
5,486,539	-				+1.1
5,486,542	-				-0.0
5,486,542	-				+0.2
5,486,632	+				-1.7
5,486,632	+				-1.6
5,486,633	-				-0.6
5,486,897	+				-0.8
5,486,938	-				-3.4
5,486,969	+		PP_4824	0.11	-2.1
5,486,969	+		PP_4824	0.11	-0.1
5,486,970	-				+0.7
5,487,060	+		PP_4824	0.14	-2.2
5,487,060	+		PP_4824	0.14	-2.7
5,487,060	+		PP_4824	0.14	-3.5
5,487,060	+		PP_4824	0.14	+0.3
5,487,060	+		PP_4824	0.14	+1.1
5,487,060	+		PP_4824	0.14	-3.5
5,487,061	-		PP_4824	0.14	+0.4
5,487,061	-		PP_4824	0.14	-1.8
5,487,061	-		PP_4824	0.14	-2.0
5,487,061	-		PP_4824	0.14	-0.3
5,487,061	-		PP_4824	0.14	+0.5
5,487,061	-		PP_4824	0.14	-2.5
5,487,061	-		PP_4824	0.14	-2.2
5,487,098	+		PP_4824	0.15	-3.0
5,487,098	+		PP_4824	0.15	-1.8
5,487,099	-		PP_4824	0.15	-1.7
5,487,099	-		PP_4824	0.15	-0.3
5,487,251	+		PP_4824	0.21	-0.1
5,487,252	-		PP_4824	0.21	-0.7
5,487,252	-		PP_4824	0.21	-0.6
5,487,287	+		PP_4824	0.22	-1.4
5,487,287	+		PP_4824	0.22	-2.3
5,487,288	-		PP_4824	0.22	-0.5
5,487,416	+		PP_4824	0.27	-0.3
5,487,416	+		PP_4824	0.27	-0.8
5,487,417	-				-1.4
5,487,417	-		PP_4824	0.27	-2.1
5,487,599	+		PP_4824	0.33	-1.6
5,487,599	+		PP_4824	0.33	-0.0
5,487,599	+		PP_4824	0.33	-1.6
5,487,599	+		PP_4824	0.33	-1.1
5,487,600	-		PP_4824	0.33	-1.8
5,487,608	+		PP_4824	0.34	-0.7
5,487,730	+		PP_4824	0.38	-2.0
5,487,730	+		PP_4824	0.38	-1.4
5,487,974	+		PP_4824	0.47	-3.5
5,487,975	-		PP_4824	0.47	-2.4
5,487,975	-		PP_4824	0.47	-0.3
5,487,975	-		PP_4824	0.47	-2.0
5,488,641	+		PP_4824	0.71	+0.6
5,488,641	+		PP_4824	0.71	-1.8
5,488,933	+		PP_4824	0.82	+0.3
5,488,933	+		PP_4824	0.82	-0.4
5,488,933	+				-2.3
5,488,933	+		PP_4824	0.82	-2.4
5,488,933	+				-0.6
5,488,933	+		PP_4824	0.82	-1.6
5,488,934	-		PP_4824	0.82	-1.8
5,489,172	-				+0.7
5,489,172	-				-0.2
5,489,172	-				-1.6
5,489,298	+				+0.3
5,489,298	+				-2.0
5,489,299	-				-1.6
5,489,299	-				-2.7
5,489,299	-				-2.2
5,489,434	+				+0.2
5,489,434	+				+1.2
5,489,434	+				-1.1
5,489,434	+				-1.1
5,489,435	-				-1.2
5,489,435	-				-0.8
5,489,498	+				+1.9
5,489,499	-				-0.6
5,489,544	-				+0.1
5,489,564	+				+2.2
5,489,565	-				-0.6
5,489,565	-				+0.4
5,489,684	+		PP_4825	0.28	+0.2
5,489,968	-		PP_4825	0.75	-0.0
5,489,981	+		PP_4825	0.77	-0.6
5,489,981	+		PP_4825	0.77	-0.6
5,489,981	+		PP_4825	0.77	+0.2
5,489,981	+		PP_4825	0.77	+0.5
5,489,981	+		PP_4825	0.77	-0.2
5,489,981	+		PP_4825	0.77	+0.6
5,489,981	+		PP_4825	0.77	+0.4
5,489,981	+		PP_4825	0.77	-0.2
5,489,981	+		PP_4825	0.77	+0.3
5,489,982	-		PP_4825	0.78	+0.4
5,489,982	-		PP_4825	0.78	+0.2
5,489,982	-		PP_4825	0.78	-3.0
5,489,985	+		PP_4825	0.78	-0.8
5,489,986	-		PP_4825	0.78	+0.6
5,490,051	+		PP_4825	0.89	-0.1
5,490,052	-		PP_4825	0.89	+1.4
5,490,052	-		PP_4825	0.89	+0.1
5,490,052	-		PP_4825	0.89	-0.9
5,490,085	+				-0.6
5,490,102	-				+0.2
5,490,113	+				+0.1
5,490,127	+				+0.7
5,490,127	+				-0.6
5,490,147	-				+0.9
5,490,255	+		PP_5714	0.20	-0.3
5,490,256	-		PP_5714	0.20	-0.6
5,490,256	-		PP_5714	0.20	-0.4
5,490,256	-		PP_5714	0.20	+0.1