Strain Fitness in Pseudomonas putida KT2440 around PP_4820

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,481,257	+		PP_4819	0.55	-0.3
5,481,363	-		PP_4819	0.63	-0.3
5,481,452	-		PP_4819	0.69	+0.3
5,481,494	-		PP_4819	0.72	+0.4
5,481,556	-		PP_4819	0.77	-0.2
5,481,587	+		PP_4819	0.79	+1.0
5,481,637	+		PP_4819	0.83	-1.8
5,481,637	+		PP_4819	0.83	+0.9
5,481,739	+				-0.2
5,481,739	+				-0.7
5,481,739	+				-0.8
5,481,865	+				-0.3
5,481,959	+				-0.1
5,481,959	+				+0.0
5,481,960	-				+0.1
5,481,960	-				-0.1
5,482,074	+				+0.0
5,482,074	+				-0.1
5,482,074	+				-0.0
5,482,106	+				+0.9
5,482,106	+				-1.3
5,482,106	+				-0.4
5,482,106	+				+0.4
5,482,106	+				-2.2
5,482,110	+				-0.6
5,482,110	+				+0.9
5,482,110	+				+0.9
5,482,110	+				-0.1
5,482,188	+		PP_4820	0.11	-0.7
5,482,368	+		PP_4820	0.29	-0.4
5,482,424	+		PP_4820	0.34	-2.2
5,482,630	+		PP_4820	0.55	-0.7
5,482,801	+				-1.1
5,482,891	+		PP_4820	0.80	-0.2
5,482,891	+		PP_4820	0.80	-1.8
5,482,891	+		PP_4820	0.80	-0.3
5,482,891	+		PP_4820	0.80	-0.8
5,482,891	+		PP_4820	0.80	-2.3
5,482,910	+		PP_4820	0.82	-0.2
5,482,910	+		PP_4820	0.82	+0.1