Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4753 and PP_4754 are separated by 123 nucleotides PP_4754 and PP_4755 are separated by 129 nucleotides PP_4755 and PP_4756 are separated by 215 nucleotides
PP_4753: PP_4753 - putative N-methylproline demethylase, at 5,408,839 to 5,410,875
_4753
PP_4754: PP_4754 - Transcriptional regulator, TetR family, at 5,410,999 to 5,411,646
_4754
PP_4755: PP_4755 - Outer membrane ferrichrome-iron receptor, at 5,411,776 to 5,414,169
_4755
PP_4756: PP_4756 - gamma-aminobutyrate permease, at 5,414,385 to 5,415,776
_4756
Position (kb) 5411
5412
5413
5414
5415 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.914 kb on - strand at 5411.059 kb on - strand at 5411.059 kb on - strand at 5411.069 kb on - strand, within PP_4754 at 5411.248 kb on + strand, within PP_4754 at 5411.249 kb on - strand, within PP_4754 at 5411.249 kb on - strand, within PP_4754 at 5411.457 kb on + strand, within PP_4754 at 5411.476 kb on + strand, within PP_4754 at 5411.494 kb on + strand, within PP_4754 at 5411.495 kb on - strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.561 kb on + strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.645 kb on - strand at 5411.680 kb on + strand at 5411.681 kb on - strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.785 kb on - strand at 5411.785 kb on - strand at 5411.785 kb on - strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.822 kb on + strand at 5411.826 kb on - strand at 5411.913 kb on - strand at 5411.959 kb on - strand at 5411.975 kb on + strand at 5411.975 kb on + strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.978 kb on + strand at 5411.978 kb on + strand at 5411.979 kb on - strand at 5411.979 kb on - strand at 5411.990 kb on + strand at 5411.990 kb on + strand at 5411.991 kb on - strand at 5412.028 kb on + strand, within PP_4755 at 5412.028 kb on + strand, within PP_4755 at 5412.028 kb on + strand, within PP_4755 at 5412.029 kb on - strand, within PP_4755 at 5412.029 kb on - strand, within PP_4755 at 5412.029 kb on - strand, within PP_4755 at 5412.035 kb on + strand, within PP_4755 at 5412.035 kb on + strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.038 kb on + strand, within PP_4755 at 5412.038 kb on + strand, within PP_4755 at 5412.038 kb on + strand, within PP_4755 at 5412.039 kb on - strand, within PP_4755 at 5412.084 kb on + strand, within PP_4755 at 5412.108 kb on - strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.146 kb on + strand, within PP_4755 at 5412.147 kb on - strand, within PP_4755 at 5412.147 kb on - strand, within PP_4755 at 5412.335 kb on + strand, within PP_4755 at 5412.335 kb on + strand, within PP_4755 at 5412.354 kb on - strand, within PP_4755 at 5412.376 kb on - strand, within PP_4755 at 5412.420 kb on - strand, within PP_4755 at 5412.444 kb on + strand, within PP_4755 at 5412.444 kb on + strand, within PP_4755 at 5412.444 kb on + strand, within PP_4755 at 5412.445 kb on - strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.636 kb on + strand at 5412.638 kb on + strand, within PP_4755 at 5412.638 kb on + strand, within PP_4755 at 5412.707 kb on + strand, within PP_4755 at 5412.792 kb on - strand, within PP_4755 at 5412.792 kb on - strand, within PP_4755 at 5412.849 kb on - strand, within PP_4755 at 5412.849 kb on - strand, within PP_4755 at 5412.894 kb on - strand, within PP_4755 at 5412.894 kb on - strand, within PP_4755 at 5412.899 kb on + strand, within PP_4755 at 5412.900 kb on - strand, within PP_4755 at 5412.926 kb on + strand, within PP_4755 at 5412.927 kb on - strand, within PP_4755 at 5412.973 kb on - strand, within PP_4755 at 5413.031 kb on + strand at 5413.032 kb on - strand, within PP_4755 at 5413.050 kb on - strand, within PP_4755 at 5413.050 kb on - strand, within PP_4755 at 5413.193 kb on + strand, within PP_4755 at 5413.267 kb on + strand, within PP_4755 at 5413.267 kb on + strand, within PP_4755 at 5413.268 kb on - strand, within PP_4755 at 5413.295 kb on + strand, within PP_4755 at 5413.295 kb on + strand, within PP_4755 at 5413.295 kb on + strand, within PP_4755 at 5413.295 kb on + strand, within PP_4755 at 5413.295 kb on + strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.304 kb on + strand, within PP_4755 at 5413.305 kb on - strand, within PP_4755 at 5413.305 kb on - strand, within PP_4755 at 5413.313 kb on + strand, within PP_4755 at 5413.313 kb on + strand, within PP_4755 at 5413.436 kb on + strand, within PP_4755 at 5413.437 kb on - strand, within PP_4755 at 5413.437 kb on - strand, within PP_4755 at 5413.488 kb on - strand, within PP_4755 at 5413.488 kb on - strand, within PP_4755 at 5413.520 kb on + strand, within PP_4755 at 5413.520 kb on + strand, within PP_4755 at 5413.520 kb on + strand, within PP_4755 at 5413.520 kb on + strand, within PP_4755 at 5413.544 kb on + strand, within PP_4755 at 5413.544 kb on + strand, within PP_4755 at 5413.544 kb on + strand, within PP_4755 at 5413.544 kb on + strand, within PP_4755 at 5413.544 kb on + strand, within PP_4755 at 5413.545 kb on - strand, within PP_4755 at 5413.545 kb on - strand, within PP_4755 at 5413.545 kb on - strand, within PP_4755 at 5413.571 kb on + strand, within PP_4755 at 5413.572 kb on - strand, within PP_4755 at 5413.572 kb on - strand, within PP_4755 at 5413.681 kb on + strand, within PP_4755 at 5413.829 kb on + strand, within PP_4755 at 5413.829 kb on + strand, within PP_4755 at 5413.830 kb on - strand, within PP_4755 at 5413.899 kb on + strand, within PP_4755 at 5414.087 kb on + strand at 5414.087 kb on + strand at 5414.087 kb on + strand at 5414.087 kb on + strand at 5414.087 kb on + strand at 5414.088 kb on - strand at 5414.088 kb on - strand at 5414.088 kb on - strand at 5414.207 kb on + strand at 5414.222 kb on + strand at 5414.222 kb on + strand at 5414.222 kb on + strand at 5414.222 kb on + strand at 5414.222 kb on + strand at 5414.222 kb on + strand at 5414.223 kb on - strand at 5414.223 kb on - strand at 5414.304 kb on + strand at 5414.367 kb on - strand at 5414.367 kb on - strand at 5414.506 kb on + strand at 5414.506 kb on + strand at 5414.506 kb on + strand at 5414.507 kb on - strand at 5414.507 kb on - strand at 5414.650 kb on + strand, within PP_4756 at 5414.650 kb on + strand, within PP_4756 at 5414.650 kb on + strand, within PP_4756 at 5414.650 kb on + strand, within PP_4756 at 5414.650 kb on + strand, within PP_4756 at 5414.651 kb on - strand, within PP_4756 at 5414.651 kb on - strand, within PP_4756 at 5414.651 kb on - strand, within PP_4756 at 5414.651 kb on - strand, within PP_4756 at 5414.664 kb on + strand, within PP_4756 at 5414.665 kb on - strand, within PP_4756 at 5414.716 kb on + strand, within PP_4756 at 5414.716 kb on + strand, within PP_4756 at 5414.775 kb on + strand, within PP_4756 at 5414.857 kb on + strand, within PP_4756 at 5414.857 kb on + strand, within PP_4756 at 5414.858 kb on - strand, within PP_4756 at 5414.858 kb on - strand, within PP_4756 at 5414.882 kb on + strand, within PP_4756 at 5414.956 kb on + strand, within PP_4756 at 5414.957 kb on - strand, within PP_4756 at 5415.028 kb on + strand, within PP_4756 at 5415.028 kb on + strand, within PP_4756 at 5415.029 kb on - strand, within PP_4756
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,410,913 + +0.4 5,410,913 + +0.1 5,410,913 + -1.5 5,410,913 + +0.4 5,410,913 + -2.2 5,410,914 - +0.1 5,411,059 - -0.7 5,411,059 - -0.1 5,411,069 - PP_4754 0.11 -0.3 5,411,248 + PP_4754 0.38 +0.4 5,411,249 - PP_4754 0.39 +0.2 5,411,249 - PP_4754 0.39 -0.9 5,411,457 + PP_4754 0.71 -1.3 5,411,476 + PP_4754 0.74 -0.0 5,411,494 + PP_4754 0.76 -0.9 5,411,495 - PP_4754 0.77 +0.1 5,411,539 + PP_4754 0.83 -1.6 5,411,539 + PP_4754 0.83 +0.0 5,411,539 + PP_4754 0.83 -1.0 5,411,539 + PP_4754 0.83 -2.1 5,411,539 + PP_4754 0.83 -0.4 5,411,540 - PP_4754 0.83 -0.4 5,411,540 - PP_4754 0.83 +0.2 5,411,540 - PP_4754 0.83 -0.4 5,411,540 - PP_4754 0.83 -1.6 5,411,561 + PP_4754 0.87 -0.2 5,411,562 - PP_4754 0.87 -1.2 5,411,562 - PP_4754 0.87 +0.3 5,411,562 - PP_4754 0.87 -1.2 5,411,645 - -0.1 5,411,680 + +0.8 5,411,681 - -1.0 5,411,784 + -1.3 5,411,784 + -1.1 5,411,784 + -0.2 5,411,784 + -3.7 5,411,785 - -2.1 5,411,785 - -3.8 5,411,785 - -4.4 5,411,786 + -0.8 5,411,786 + -1.9 5,411,786 + -2.6 5,411,786 + -4.3 5,411,787 - -1.8 5,411,787 - -1.3 5,411,787 - -4.5 5,411,787 - -1.6 5,411,787 - -0.9 5,411,822 + -1.2 5,411,826 - -2.5 5,411,913 - -2.6 5,411,959 - -2.3 5,411,975 + -1.0 5,411,975 + -3.3 5,411,976 - -1.4 5,411,976 - -4.9 5,411,976 - -3.2 5,411,976 - -0.7 5,411,976 - -1.3 5,411,978 + -2.2 5,411,978 + -0.4 5,411,979 - -2.2 5,411,979 - -1.2 5,411,990 + -1.9 5,411,990 + -0.5 5,411,991 - -3.1 5,412,028 + PP_4755 0.11 -4.1 5,412,028 + PP_4755 0.11 -2.8 5,412,028 + PP_4755 0.11 -2.2 5,412,029 - PP_4755 0.11 -2.0 5,412,029 - PP_4755 0.11 -3.5 5,412,029 - PP_4755 0.11 -1.7 5,412,035 + PP_4755 0.11 -2.0 5,412,035 + PP_4755 0.11 -0.8 5,412,036 - PP_4755 0.11 -0.9 5,412,036 - PP_4755 0.11 -1.2 5,412,036 - PP_4755 0.11 -2.9 5,412,036 - PP_4755 0.11 -1.1 5,412,036 - PP_4755 0.11 -0.0 5,412,036 - PP_4755 0.11 -2.0 5,412,036 - PP_4755 0.11 -2.2 5,412,038 + PP_4755 0.11 -2.2 5,412,038 + PP_4755 0.11 -0.6 5,412,038 + PP_4755 0.11 -1.0 5,412,039 - PP_4755 0.11 -1.1 5,412,084 + PP_4755 0.13 +0.5 5,412,108 - PP_4755 0.14 -0.8 5,412,140 + PP_4755 0.15 -0.4 5,412,140 + PP_4755 0.15 -3.6 5,412,140 + PP_4755 0.15 -2.8 5,412,140 + PP_4755 0.15 +1.2 5,412,141 - PP_4755 0.15 -3.2 5,412,141 - PP_4755 0.15 -2.4 5,412,141 - PP_4755 0.15 -4.0 5,412,141 - PP_4755 0.15 -1.4 5,412,146 + PP_4755 0.15 -1.4 5,412,147 - PP_4755 0.15 -2.0 5,412,147 - PP_4755 0.15 -0.5 5,412,335 + PP_4755 0.23 -1.4 5,412,335 + PP_4755 0.23 -3.1 5,412,354 - PP_4755 0.24 -3.0 5,412,376 - PP_4755 0.25 -0.5 5,412,420 - PP_4755 0.27 -2.1 5,412,444 + PP_4755 0.28 +0.5 5,412,444 + PP_4755 0.28 -3.3 5,412,444 + PP_4755 0.28 -0.7 5,412,445 - PP_4755 0.28 -2.9 5,412,446 + PP_4755 0.28 -1.3 5,412,446 + PP_4755 0.28 -1.5 5,412,446 + PP_4755 0.28 -4.5 5,412,446 + PP_4755 0.28 -1.5 5,412,446 + PP_4755 0.28 -1.7 5,412,446 + PP_4755 0.28 +0.2 5,412,446 + PP_4755 0.28 -0.4 5,412,447 - PP_4755 0.28 -2.7 5,412,447 - PP_4755 0.28 -1.5 5,412,447 - PP_4755 0.28 -1.8 5,412,447 - PP_4755 0.28 -1.2 5,412,447 - PP_4755 0.28 -3.0 5,412,447 - PP_4755 0.28 -1.8 5,412,447 - PP_4755 0.28 -0.5 5,412,447 - PP_4755 0.28 -1.0 5,412,512 + PP_4755 0.31 -2.4 5,412,512 + PP_4755 0.31 -3.0 5,412,512 + PP_4755 0.31 -2.2 5,412,512 + PP_4755 0.31 -0.7 5,412,513 - PP_4755 0.31 -1.3 5,412,513 - PP_4755 0.31 -1.1 5,412,513 - PP_4755 0.31 -1.8 5,412,513 - PP_4755 0.31 +1.3 5,412,636 + +0.4 5,412,638 + PP_4755 0.36 -1.3 5,412,638 + PP_4755 0.36 -1.2 5,412,707 + PP_4755 0.39 -1.0 5,412,792 - PP_4755 0.42 +1.1 5,412,792 - PP_4755 0.42 -0.7 5,412,849 - PP_4755 0.45 -1.5 5,412,849 - PP_4755 0.45 -1.9 5,412,894 - PP_4755 0.47 -2.0 5,412,894 - PP_4755 0.47 -1.3 5,412,899 + PP_4755 0.47 -1.8 5,412,900 - PP_4755 0.47 -1.3 5,412,926 + PP_4755 0.48 -1.1 5,412,927 - PP_4755 0.48 -1.1 5,412,973 - PP_4755 0.50 -1.3 5,413,031 + -1.9 5,413,032 - PP_4755 0.52 -2.9 5,413,050 - PP_4755 0.53 -0.6 5,413,050 - PP_4755 0.53 -0.7 5,413,193 + PP_4755 0.59 -0.3 5,413,267 + PP_4755 0.62 -0.5 5,413,267 + PP_4755 0.62 -1.1 5,413,268 - PP_4755 0.62 -1.0 5,413,295 + PP_4755 0.63 -2.8 5,413,295 + PP_4755 0.63 -0.9 5,413,295 + PP_4755 0.63 -0.7 5,413,295 + PP_4755 0.63 -1.4 5,413,295 + PP_4755 0.63 -2.8 5,413,296 - PP_4755 0.63 -2.7 5,413,296 - PP_4755 0.63 -1.5 5,413,296 - PP_4755 0.63 -1.1 5,413,296 - PP_4755 0.63 -0.5 5,413,296 - PP_4755 0.63 -2.7 5,413,296 - PP_4755 0.63 -1.0 5,413,296 - PP_4755 0.63 -0.7 5,413,296 - PP_4755 0.63 -1.8 5,413,296 - PP_4755 0.63 -2.5 5,413,296 - PP_4755 0.63 -1.4 5,413,296 - PP_4755 0.63 -1.7 5,413,296 - PP_4755 0.63 -1.6 5,413,304 + PP_4755 0.64 -0.7 5,413,305 - PP_4755 0.64 -0.4 5,413,305 - PP_4755 0.64 -2.6 5,413,313 + PP_4755 0.64 -0.6 5,413,313 + PP_4755 0.64 -1.8 5,413,436 + PP_4755 0.69 -0.8 5,413,437 - PP_4755 0.69 -1.5 5,413,437 - PP_4755 0.69 -1.4 5,413,488 - PP_4755 0.72 -1.4 5,413,488 - PP_4755 0.72 -1.1 5,413,520 + PP_4755 0.73 -2.0 5,413,520 + PP_4755 0.73 -3.5 5,413,520 + PP_4755 0.73 -1.4 5,413,520 + PP_4755 0.73 -4.0 5,413,544 + PP_4755 0.74 -1.6 5,413,544 + PP_4755 0.74 -1.2 5,413,544 + PP_4755 0.74 -2.1 5,413,544 + PP_4755 0.74 +0.4 5,413,544 + PP_4755 0.74 -0.6 5,413,545 - PP_4755 0.74 -0.5 5,413,545 - PP_4755 0.74 +1.0 5,413,545 - PP_4755 0.74 -2.7 5,413,571 + PP_4755 0.75 -0.5 5,413,572 - PP_4755 0.75 -3.4 5,413,572 - PP_4755 0.75 -1.4 5,413,681 + PP_4755 0.80 -0.5 5,413,829 + PP_4755 0.86 -1.5 5,413,829 + PP_4755 0.86 -2.9 5,413,830 - PP_4755 0.86 -2.8 5,413,899 + PP_4755 0.89 -2.8 5,414,087 + -1.6 5,414,087 + -2.4 5,414,087 + -2.0 5,414,087 + -3.9 5,414,087 + +0.0 5,414,088 - -0.7 5,414,088 - -1.6 5,414,088 - -0.6 5,414,207 + -3.2 5,414,222 + -0.0 5,414,222 + -1.5 5,414,222 + -1.8 5,414,222 + -3.1 5,414,222 + -0.4 5,414,222 + -0.9 5,414,223 - +0.1 5,414,223 - +0.0 5,414,304 + -1.7 5,414,367 - +0.7 5,414,367 - +1.0 5,414,506 + -0.2 5,414,506 + -0.8 5,414,506 + -0.4 5,414,507 - +1.6 5,414,507 - +0.1 5,414,650 + PP_4756 0.19 -0.4 5,414,650 + PP_4756 0.19 -0.7 5,414,650 + PP_4756 0.19 -0.1 5,414,650 + PP_4756 0.19 -0.6 5,414,650 + PP_4756 0.19 -0.0 5,414,651 - PP_4756 0.19 +0.2 5,414,651 - PP_4756 0.19 +0.9 5,414,651 - PP_4756 0.19 +1.1 5,414,651 - PP_4756 0.19 +0.0 5,414,664 + PP_4756 0.20 +0.3 5,414,665 - PP_4756 0.20 -0.2 5,414,716 + PP_4756 0.24 -1.7 5,414,716 + PP_4756 0.24 -2.1 5,414,775 + PP_4756 0.28 -0.3 5,414,857 + PP_4756 0.34 -0.3 5,414,857 + PP_4756 0.34 -0.7 5,414,858 - PP_4756 0.34 +0.8 5,414,858 - PP_4756 0.34 -0.6 5,414,882 + PP_4756 0.36 -0.0 5,414,956 + PP_4756 0.41 +1.6 5,414,957 - PP_4756 0.41 -0.7 5,415,028 + PP_4756 0.46 -0.1 5,415,028 + PP_4756 0.46 -1.9 5,415,029 - PP_4756 0.46 -0.3
Or see this region's nucleotide sequence