Strain Fitness in Pseudomonas putida KT2440 around PP_4642

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,265,968	+		PP_4641	0.69	+0.8
5,265,968	+		PP_4641	0.69	+0.6
5,265,969	-		PP_4641	0.69	-2.7
5,265,977	+		PP_4641	0.69	+0.1
5,265,977	+		PP_4641	0.69	-0.1
5,265,977	+		PP_4641	0.69	-0.0
5,265,977	+		PP_4641	0.69	+0.5
5,265,977	+		PP_4641	0.69	+0.5
5,265,977	+		PP_4641	0.69	+0.1
5,265,978	-		PP_4641	0.69	+0.3
5,265,978	-		PP_4641	0.69	+0.3
5,265,978	-		PP_4641	0.69	+0.2
5,266,265	+		PP_4641	0.83	-0.1
5,266,364	+		PP_4641	0.88	+0.6
5,266,364	+		PP_4641	0.88	+0.3
5,266,364	+		PP_4641	0.88	+0.5
5,266,448	+				+0.8
5,266,448	+				+0.8
5,266,448	+				-0.3
5,266,449	-				-1.7
5,266,449	-				+0.7
5,266,449	-				+1.9
5,266,451	+				+0.9
5,266,451	+				+0.2
5,266,452	-				-2.3
5,266,452	-				-0.4
5,266,452	-				+0.2
5,266,470	-				+1.4
5,266,470	-				-0.4
5,266,470	-				-0.4
5,266,470	-				-0.7
5,266,556	-				-0.5
5,266,556	-				-0.3
5,266,596	+				+0.3
5,266,596	+				+0.3
5,266,596	+				-0.3
5,266,597	-				-2.5
5,266,597	-				-0.1
5,266,599	+				-0.0
5,266,599	+				-0.4
5,266,599	+				+1.1
5,266,599	+				+0.4
5,266,599	+				+0.0
5,266,599	+				-0.6
5,266,600	-				+1.8
5,266,600	-				+1.0
5,266,615	+				+0.0
5,266,695	+				-0.7
5,266,721	-				-0.8
5,266,742	-				+0.3
5,266,742	-				+0.1
5,266,742	-				+0.3
5,266,742	-				+0.9
5,266,745	+				-0.4
5,266,745	+				-0.2
5,266,745	+				-1.5
5,266,745	+				-2.8
5,266,745	+				+0.9
5,266,746	-				+0.4
5,266,748	-				+0.4
5,266,772	-				+0.1
5,267,051	-		PP_4642	0.74	-1.2
5,267,162	+				-0.7
5,267,162	+				-1.2
5,267,163	-				+0.2
5,267,167	-				+0.3
5,267,167	-				-0.4
5,267,170	+				-1.3
5,267,170	+				+0.5
5,267,170	+				-0.0
5,267,170	+				-0.1
5,267,171	-				-0.3
5,267,171	-				+1.2
5,267,174	-				+0.8
5,267,174	-				-0.5
5,267,214	+				+0.9
5,267,214	+				-1.4
5,267,214	+				-0.7
5,267,214	+				-0.3
5,267,214	+				-1.5
5,267,215	-				+0.5
5,267,215	-				-0.1
5,267,238	-				+0.6
5,267,249	+				-1.7
5,267,272	+				-1.0
5,267,273	-				+0.0
5,267,341	-				-2.3
5,267,366	+				-0.6
5,267,396	+				+0.0
5,267,420	+				+0.5
5,267,420	+				+0.8
5,267,420	+				+0.6
5,267,421	-				+0.2
5,267,421	-				-0.1
5,267,421	-				+0.2
5,267,421	-				+0.4
5,267,421	-				-0.8
5,267,421	-				+0.2
5,267,421	-				+1.1
5,267,421	-				-0.3
5,267,490	+				+0.2
5,267,490	+				-0.5
5,267,490	+				-0.5
5,267,491	-				+0.3
5,267,491	-				-0.4
5,267,517	+				+0.1
5,267,517	+				+0.0
5,267,517	+				-1.0
5,267,517	+				-0.5
5,267,517	+				-0.2
5,267,517	+				-1.1
5,267,517	+				-0.4
5,267,517	+				+0.8
5,267,517	+				+0.2
5,267,517	+				+1.4
5,267,518	-				+1.1
5,267,518	-				+0.5
5,267,518	-				+1.2
5,267,518	-				+1.2
5,267,518	-				-0.4
5,267,518	-				+0.5
5,267,518	-				+0.2
5,267,536	+				-0.1
5,267,916	-		PP_4643	0.33	-1.6
5,268,082	-		PP_4643	0.44	+0.1