Strain Fitness in Pseudomonas putida KT2440 around PP_4482

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
5,091,787	+		PP_4481	0.58	-1.3
5,091,787	+		PP_4481	0.58	-0.5
5,091,788	-		PP_4481	0.58	+0.2
5,091,788	-		PP_4481	0.58	-0.4
5,091,788	-		PP_4481	0.58	-0.9
5,091,836	-		PP_4481	0.62	+0.3
5,092,243	+				-0.7
5,092,243	+				-2.3
5,092,299	+				+1.3
5,092,360	+				-0.7
5,092,360	+				-0.8
5,092,360	+				-0.4
5,092,360	+				-2.6
5,092,360	+				-3.2
5,092,361	-				-0.6
5,092,361	-				-0.3
5,092,405	+				-1.1
5,092,405	+				-0.2
5,092,406	-				-0.9
5,092,473	+				+0.0
5,092,474	-				-1.8
5,092,533	+				-0.3
5,092,533	+				-0.9
5,092,533	+				-1.8
5,092,534	-				+1.4
5,092,534	-				-0.2
5,092,534	-				+0.5
5,092,534	-				-0.6
5,092,617	+				+0.2
5,092,617	+				-1.2
5,092,617	+				+0.1
5,092,618	-				-0.9
5,092,618	-				+0.5
5,092,733	+				+0.9
5,092,733	+				-0.1
5,092,733	+				-1.3
5,092,738	+				-0.4
5,092,852	+		PP_4482	0.22	-2.5
5,092,880	-		PP_4482	0.24	-0.8
5,092,892	+		PP_4482	0.26	-0.2
5,093,034	-		PP_4482	0.40	-1.9
5,093,034	-		PP_4482	0.40	+0.1
5,093,067	+		PP_4482	0.43	-1.1
5,093,302	+		PP_4482	0.67	-0.2
5,093,509	+		PP_4482	0.88	-0.4
5,093,509	+		PP_4482	0.88	+0.1
5,093,509	+		PP_4482	0.88	-2.3
5,093,621	+				+0.1
5,093,621	+				-3.5
5,093,621	+				+0.4
5,093,622	-				-2.4
5,093,622	-				-1.4
5,093,622	-				-0.7
5,093,622	-				+0.1
5,093,626	+				+0.2
5,093,696	+				-0.4
5,093,721	+				+0.1
5,093,722	-				-0.8
5,093,876	+		PP_4483	0.20	-1.2
5,093,877	-		PP_4483	0.21	-0.9
5,094,037	+		PP_4483	0.41	+1.2
5,094,037	+		PP_4483	0.41	-0.2
5,094,037	+		PP_4483	0.41	-1.7
5,094,037	+		PP_4483	0.41	-0.3
5,094,037	+		PP_4483	0.41	-0.1
5,094,037	+		PP_4483	0.41	-0.6
5,094,037	+		PP_4483	0.41	+1.4
5,094,037	+		PP_4483	0.41	-0.4
5,094,038	-		PP_4483	0.42	-0.1
5,094,038	-		PP_4483	0.42	-2.9
5,094,038	-		PP_4483	0.42	-0.1
5,094,087	+		PP_4483	0.48	-0.4
5,094,088	-		PP_4483	0.48	+1.1
5,094,088	-		PP_4483	0.48	+0.8
5,094,480	+				+1.1
5,094,481	-				+0.5
5,094,481	-				+0.6
5,094,592	+		PP_4484	0.12	-0.5
5,094,592	+		PP_4484	0.12	-0.5
5,094,593	-		PP_4484	0.12	-1.0
5,094,593	-		PP_4484	0.12	-1.3
5,094,593	-		PP_4484	0.12	+0.5
5,094,593	-		PP_4484	0.12	-1.5
5,094,611	+		PP_4484	0.15	+0.3
5,094,611	+		PP_4484	0.15	+0.6
5,094,611	+		PP_4484	0.15	-0.5
5,094,611	+		PP_4484	0.15	-0.8
5,094,611	+		PP_4484	0.15	+0.2
5,094,611	+		PP_4484	0.15	-3.0
5,094,612	-		PP_4484	0.15	-0.7
5,094,613	+		PP_4484	0.15	-0.2
5,094,613	+		PP_4484	0.15	+0.6
5,094,613	+		PP_4484	0.15	-0.1
5,094,614	-		PP_4484	0.15	-0.4