Strain Fitness in Pseudomonas putida KT2440 around PP_4126

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,664,313	+				+2.5
4,664,314	-		PP_4125	0.46	+0.4
4,664,574	+		PP_4125	0.72	-1.7
4,664,574	+		PP_4125	0.72	-0.2
4,664,574	+		PP_4125	0.72	-2.3
4,664,575	-		PP_4125	0.72	-1.2
4,664,826	+				-1.1
4,664,826	+				-1.4
4,664,826	+				+0.0
4,664,876	+				-2.4
4,664,876	+				-0.9
4,664,876	+				+0.3
4,664,877	-				-1.4
4,664,893	+				+0.4
4,664,894	-				-0.0
4,665,054	+		PP_4126	0.34	-1.9
4,665,266	+		PP_4126	0.73	+0.3
4,665,266	+		PP_4126	0.73	-0.4
4,665,323	+		PP_4126	0.83	+3.5
4,665,323	+				-1.4
4,665,324	-		PP_4126	0.83	-0.1
4,665,324	-		PP_4126	0.83	-0.1
4,665,441	+				-0.4
4,665,441	+				+1.2
4,665,484	+		PP_4127	0.12	-2.4
4,665,750	+		PP_4127	0.65	-0.9
4,665,750	+		PP_4127	0.65	-0.6
4,665,751	-		PP_4127	0.65	-1.4
4,665,924	+				-0.2
4,666,373	+				-0.5
4,666,373	+				-1.1
4,666,374	-				+0.9
4,666,374	-				+0.9