Strain Fitness in Pseudomonas putida KT2440 around PP_4124

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,660,373	-		PP_4123	0.54	+0.3
4,660,501	+		PP_4123	0.63	-0.4
4,660,857	+		PP_4123	0.89	+0.9
4,660,913	-				-1.4
4,660,913	-				+3.2
4,661,002	+				-0.1
4,661,145	+				+1.3
4,661,154	-				-0.1
4,661,154	-				-1.4
4,661,196	-				-1.4
4,661,231	-				+0.3
4,661,293	+				-2.6
4,661,293	+				-1.4
4,661,294	-				-0.7
4,661,323	-				+1.7
4,661,323	-				+1.9
4,661,323	-				+3.2
4,661,535	+				-0.9
4,661,536	-		PP_4124	0.15	-2.3
4,661,614	+		PP_4124	0.18	+1.9
4,661,617	+		PP_4124	0.18	-0.4
4,661,617	+		PP_4124	0.18	+0.1
4,661,617	+		PP_4124	0.18	-0.9
4,661,617	+				-0.4
4,661,617	+		PP_4124	0.18	-1.7
4,661,618	-		PP_4124	0.18	-2.4
4,661,618	-				-1.9
4,661,654	-		PP_4124	0.19	+1.0
4,661,654	-		PP_4124	0.19	+1.6
4,661,674	+		PP_4124	0.20	-1.1
4,661,675	-		PP_4124	0.20	+0.4
4,661,675	-				-1.1
4,661,750	+		PP_4124	0.23	+0.9
4,661,873	+		PP_4124	0.27	+0.6
4,661,873	+		PP_4124	0.27	+1.9
4,661,951	-		PP_4124	0.30	-2.2
4,661,951	-		PP_4124	0.30	-2.5
4,662,045	-		PP_4124	0.33	-0.4
4,662,054	+		PP_4124	0.34	+0.0
4,662,100	+		PP_4124	0.35	-3.5
4,662,131	-		PP_4124	0.37	-2.6
4,662,136	+		PP_4124	0.37	+2.6
4,662,136	+		PP_4124	0.37	+0.4
4,662,136	+		PP_4124	0.37	-1.9
4,662,464	+		PP_4124	0.49	+0.3
4,662,465	-		PP_4124	0.49	+0.5
4,662,783	-				-1.7
4,662,838	+		PP_4124	0.63	-1.7
4,662,838	+		PP_4124	0.63	-2.0
4,663,473	-		PP_4124	0.86	-1.8
4,663,640	-				+2.3
4,663,649	+				+0.9
4,664,313	+				+2.5
4,664,314	-		PP_4125	0.46	+0.4
4,664,574	+		PP_4125	0.72	-1.7
4,664,574	+		PP_4125	0.72	-0.2
4,664,574	+		PP_4125	0.72	-2.3
4,664,575	-		PP_4125	0.72	-1.2
4,664,826	+				-1.1
4,664,826	+				-1.4
4,664,826	+				+0.0