Strain Fitness in Pseudomonas putida KT2440 around PP_4118

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4116 and PP_4118 are separated by 257 nucleotidesPP_4118 and PP_4119 are separated by 383 nucleotidesPP_4119 and PP_4120 are separated by 9 nucleotides PP_4116: PP_4116 - isocitrate lyase, at 4,653,523 to 4,654,848 _4116 PP_4118: PP_4118 - putative Membrane protein, at 4,655,106 to 4,655,801 _4118 PP_4119: PP_4119 - NADH-quinone oxidoreductase subunit A, at 4,656,185 to 4,656,598 _4119 PP_4120: PP_4120 - NADH-quinone oxidoreductase subunit B, at 4,656,608 to 4,657,285 _4120 Position (kb) 4655 4656Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4654.221 kb on - strand, within PP_4116at 4654.333 kb on + strand, within PP_4116at 4654.333 kb on + strand, within PP_4116at 4654.333 kb on + strand, within PP_4116at 4654.334 kb on - strand, within PP_4116at 4654.334 kb on - strand, within PP_4116at 4654.471 kb on + strand, within PP_4116at 4654.492 kb on + strand, within PP_4116at 4654.492 kb on + strand, within PP_4116at 4654.493 kb on - strand, within PP_4116at 4654.579 kb on + strand, within PP_4116at 4654.651 kb on + strand, within PP_4116at 4654.675 kb on + strand, within PP_4116at 4654.676 kb on - strand, within PP_4116at 4654.676 kb on - strand, within PP_4116at 4654.676 kb on - strand, within PP_4116at 4654.849 kb on + strandat 4654.850 kb on - strandat 4654.973 kb on + strandat 4654.974 kb on - strandat 4654.974 kb on - strandat 4654.995 kb on + strandat 4654.995 kb on + strandat 4654.995 kb on + strandat 4654.995 kb on + strandat 4654.996 kb on - strandat 4655.105 kb on + strandat 4655.105 kb on + strandat 4655.106 kb on - strandat 4655.106 kb on - strandat 4655.106 kb on - strandat 4655.106 kb on - strandat 4655.190 kb on + strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strandat 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strandat 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strandat 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.296 kb on - strand, within PP_4118at 4655.412 kb on + strand, within PP_4118at 4655.412 kb on + strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.425 kb on - strand, within PP_4118at 4655.436 kb on - strand, within PP_4118at 4655.501 kb on - strand, within PP_4118at 4655.685 kb on + strand, within PP_4118at 4655.686 kb on - strand, within PP_4118at 4655.762 kb on - strandat 4655.828 kb on - strandat 4655.946 kb on + strandat 4655.951 kb on - strandat 4655.966 kb on - strandat 4656.015 kb on + strandat 4656.021 kb on + strandat 4656.028 kb on - strandat 4656.062 kb on + strandat 4656.135 kb on + strandat 4656.169 kb on + strandat 4656.169 kb on + strandat 4656.172 kb on - strandat 4656.172 kb on - strandat 4656.181 kb on + strandat 4656.182 kb on - strandat 4656.384 kb on - strand, within PP_4119at 4656.499 kb on - strandat 4656.524 kb on + strand, within PP_4119at 4656.529 kb on - strand, within PP_4119at 4656.529 kb on - strand, within PP_4119at 4656.614 kb on + strandat 4656.614 kb on + strandat 4656.614 kb on + strandat 4656.615 kb on - strandat 4656.615 kb on - strandat 4656.615 kb on - strandat 4656.791 kb on + strand, within PP_4120

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,654,221 - PP_4116 0.53 +0.2
4,654,333 + PP_4116 0.61 -3.0
4,654,333 + PP_4116 0.61 +1.5
4,654,333 + PP_4116 0.61 -1.5
4,654,334 - PP_4116 0.61 +0.2
4,654,334 - PP_4116 0.61 -1.8
4,654,471 + PP_4116 0.71 +0.1
4,654,492 + PP_4116 0.73 +0.5
4,654,492 + PP_4116 0.73 +0.7
4,654,493 - PP_4116 0.73 +0.0
4,654,579 + PP_4116 0.80 -0.6
4,654,651 + PP_4116 0.85 -0.6
4,654,675 + PP_4116 0.87 -0.6
4,654,676 - PP_4116 0.87 +1.4
4,654,676 - PP_4116 0.87 +0.1
4,654,676 - PP_4116 0.87 +0.1
4,654,849 + -0.8
4,654,850 - -0.1
4,654,973 + +0.1
4,654,974 - -0.8
4,654,974 - +1.6
4,654,995 + -0.4
4,654,995 + +0.1
4,654,995 + -0.3
4,654,995 + -0.7
4,654,996 - +0.8
4,655,105 + -0.2
4,655,105 + -1.1
4,655,106 - +0.0
4,655,106 - +0.9
4,655,106 - +1.5
4,655,106 - +0.2
4,655,190 + PP_4118 0.12 -0.2
4,655,191 - PP_4118 0.12 -0.3
4,655,191 - PP_4118 0.12 -1.1
4,655,191 - PP_4118 0.12 -0.0
4,655,191 - PP_4118 0.12 +0.0
4,655,192 + PP_4118 0.12 +0.2
4,655,192 + PP_4118 0.12 -0.5
4,655,192 + PP_4118 0.12 -0.6
4,655,192 + PP_4118 0.12 +0.6
4,655,192 + PP_4118 0.12 -1.0
4,655,192 + PP_4118 0.12 +0.0
4,655,192 + PP_4118 0.12 +0.4
4,655,192 + PP_4118 0.12 -0.0
4,655,192 + PP_4118 0.12 -1.8
4,655,192 + PP_4118 0.12 -0.1
4,655,192 + +0.8
4,655,192 + PP_4118 0.12 +0.2
4,655,192 + PP_4118 0.12 -0.6
4,655,192 + PP_4118 0.12 -0.3
4,655,192 + PP_4118 0.12 +0.0
4,655,193 - PP_4118 0.12 -0.1
4,655,193 - PP_4118 0.12 -0.6
4,655,193 - PP_4118 0.12 -2.6
4,655,193 - PP_4118 0.12 -2.7
4,655,193 - PP_4118 0.12 -0.7
4,655,193 - -2.1
4,655,193 - PP_4118 0.12 +0.6
4,655,193 - PP_4118 0.12 +0.5
4,655,193 - PP_4118 0.12 +0.4
4,655,193 - PP_4118 0.12 +0.4
4,655,193 - PP_4118 0.12 -1.8
4,655,193 - PP_4118 0.12 -0.9
4,655,193 - PP_4118 0.12 -1.1
4,655,193 - PP_4118 0.12 -1.2
4,655,194 + PP_4118 0.13 +0.5
4,655,194 + PP_4118 0.13 +1.3
4,655,194 + -1.7
4,655,194 + PP_4118 0.13 -0.0
4,655,194 + PP_4118 0.13 -0.0
4,655,194 + PP_4118 0.13 -1.7
4,655,194 + PP_4118 0.13 +0.1
4,655,194 + PP_4118 0.13 -2.3
4,655,194 + PP_4118 0.13 +0.6
4,655,194 + PP_4118 0.13 +0.3
4,655,194 + PP_4118 0.13 -1.3
4,655,194 + PP_4118 0.13 -0.5
4,655,194 + PP_4118 0.13 +0.0
4,655,194 + PP_4118 0.13 +0.7
4,655,194 + PP_4118 0.13 +0.0
4,655,194 + PP_4118 0.13 +0.2
4,655,195 - PP_4118 0.13 -0.1
4,655,195 - PP_4118 0.13 -1.0
4,655,195 - PP_4118 0.13 -1.7
4,655,195 - PP_4118 0.13 -0.3
4,655,195 - PP_4118 0.13 -0.1
4,655,195 - PP_4118 0.13 -0.4
4,655,195 - PP_4118 0.13 -4.2
4,655,195 - PP_4118 0.13 -0.1
4,655,195 - PP_4118 0.13 +0.1
4,655,195 - PP_4118 0.13 -2.2
4,655,195 - PP_4118 0.13 -1.4
4,655,195 - PP_4118 0.13 +0.1
4,655,195 - PP_4118 0.13 -0.6
4,655,196 + PP_4118 0.13 +0.2
4,655,196 + PP_4118 0.13 +0.6
4,655,196 + PP_4118 0.13 +2.3
4,655,196 + PP_4118 0.13 +1.3
4,655,196 + PP_4118 0.13 -0.6
4,655,196 + PP_4118 0.13 -0.2
4,655,196 + PP_4118 0.13 -0.9
4,655,196 + PP_4118 0.13 +1.0
4,655,196 + PP_4118 0.13 -0.5
4,655,196 + PP_4118 0.13 +0.5
4,655,196 + PP_4118 0.13 -0.1
4,655,196 + PP_4118 0.13 +0.4
4,655,196 + PP_4118 0.13 +0.8
4,655,196 + PP_4118 0.13 +0.3
4,655,196 + PP_4118 0.13 -0.8
4,655,196 + PP_4118 0.13 -0.3
4,655,196 + PP_4118 0.13 -1.3
4,655,196 + PP_4118 0.13 +0.0
4,655,197 - PP_4118 0.13 +0.1
4,655,197 - PP_4118 0.13 -1.6
4,655,197 - PP_4118 0.13 -0.7
4,655,197 - PP_4118 0.13 -0.7
4,655,197 - PP_4118 0.13 +0.8
4,655,197 - PP_4118 0.13 -1.4
4,655,197 - PP_4118 0.13 -0.1
4,655,197 - PP_4118 0.13 +0.3
4,655,197 - PP_4118 0.13 +0.5
4,655,197 - PP_4118 0.13 +0.8
4,655,197 - PP_4118 0.13 -0.6
4,655,197 - PP_4118 0.13 -2.5
4,655,197 - PP_4118 0.13 +0.8
4,655,197 - PP_4118 0.13 -3.3
4,655,296 - PP_4118 0.27 +1.8
4,655,412 + PP_4118 0.44 -1.0
4,655,412 + PP_4118 0.44 +0.4
4,655,413 - PP_4118 0.44 +0.0
4,655,413 - PP_4118 0.44 +0.3
4,655,413 - PP_4118 0.44 -0.5
4,655,413 - PP_4118 0.44 +0.6
4,655,413 - PP_4118 0.44 -3.5
4,655,425 - PP_4118 0.46 -0.7
4,655,436 - PP_4118 0.47 +0.7
4,655,501 - PP_4118 0.57 -0.8
4,655,685 + PP_4118 0.83 -0.9
4,655,686 - PP_4118 0.83 -2.8
4,655,762 - -4.2
4,655,828 - -0.4
4,655,946 + +0.6
4,655,951 - +0.3
4,655,966 - -0.9
4,656,015 + -0.2
4,656,021 + -0.1
4,656,028 - -0.7
4,656,062 + -0.4
4,656,135 + +0.0
4,656,169 + +0.7
4,656,169 + -2.1
4,656,172 - -0.1
4,656,172 - -0.1
4,656,181 + -0.3
4,656,182 - -1.5
4,656,384 - PP_4119 0.48 +0.3
4,656,499 - +0.3
4,656,524 + PP_4119 0.82 -0.4
4,656,529 - PP_4119 0.83 +4.2
4,656,529 - PP_4119 0.83 +1.1
4,656,614 + -2.1
4,656,614 + +0.9
4,656,614 + -0.4
4,656,615 - -2.3
4,656,615 - -1.7
4,656,615 - -2.2
4,656,791 + PP_4120 0.27 -2.0

Or see this region's nucleotide sequence