Strain Fitness in Pseudomonas putida KT2440 around PP_3770

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,297,746	+		PP_3768	0.63	-0.3
4,297,746	+		PP_3768	0.63	-1.6
4,297,746	+		PP_3768	0.63	-1.3
4,297,746	+		PP_3768	0.63	+0.9
4,297,747	-		PP_3768	0.63	-0.1
4,297,848	+		PP_3768	0.75	-1.0
4,297,848	+		PP_3768	0.75	+0.4
4,297,849	-		PP_3768	0.75	-0.4
4,297,935	+		PP_3768	0.86	+0.1
4,297,938	+		PP_3768	0.86	+0.2
4,297,939	-		PP_3768	0.86	-1.4
4,297,939	-		PP_3768	0.86	+0.6
4,297,962	+		PP_3768	0.89	-3.0
4,298,053	+				-0.3
4,298,054	-				-1.2
4,298,054	-				-0.5
4,298,084	+				-2.4
4,298,120	+				-1.1
4,298,120	+				+0.1
4,298,131	+				-0.0
4,298,132	-				+0.1
4,298,170	+				-1.0
4,298,170	+				+0.8
4,298,171	-				+0.3
4,298,171	-				-0.2
4,298,171	-				-0.1
4,298,173	+				-0.7
4,298,173	+				+0.5
4,298,173	+				-1.0
4,298,174	-				-0.1
4,298,174	-				+0.1
4,298,215	-				+0.1
4,298,320	+		PP_3769	0.30	+0.0
4,298,339	+		PP_3769	0.35	-1.7
4,298,339	+		PP_3769	0.35	-2.0
4,298,340	-		PP_3769	0.35	-0.8
4,298,404	+		PP_3769	0.53	-1.5
4,298,404	+		PP_3769	0.53	-1.6
4,298,425	+		PP_3769	0.59	-0.0
4,298,426	-		PP_3769	0.60	+0.7
4,298,426	-		PP_3769	0.60	-0.3
4,298,429	-		PP_3769	0.60	-0.4
4,298,446	+		PP_3769	0.65	-0.1
4,298,446	+		PP_3769	0.65	-0.7
4,298,447	-		PP_3769	0.66	-0.0
4,298,447	-		PP_3769	0.66	-0.7
4,298,447	-		PP_3769	0.66	+0.8
4,298,447	-		PP_3769	0.66	-2.5
4,298,450	+		PP_3769	0.66	-0.6
4,298,451	-		PP_3769	0.67	+0.2
4,298,473	+		PP_3769	0.73	+0.0
4,298,474	-		PP_3769	0.73	-0.6
4,298,477	-		PP_3769	0.74	+0.7
4,298,485	+		PP_3769	0.76	+0.5
4,298,488	+		PP_3769	0.77	-0.5
4,298,488	+		PP_3769	0.77	+0.4
4,298,524	+		PP_3769	0.87	+0.7
4,298,524	+		PP_3769	0.87	-0.6
4,298,524	+		PP_3769	0.87	-0.6
4,298,524	+		PP_3769	0.87	-0.7
4,298,524	+		PP_3769	0.87	+0.0
4,298,524	+		PP_3769	0.87	-0.1
4,298,525	-		PP_3769	0.88	+0.4
4,298,525	-		PP_3769	0.88	-1.5
4,298,525	-		PP_3769	0.88	-0.4
4,298,527	+		PP_3769	0.88	+1.0
4,298,527	+		PP_3769	0.88	+0.6
4,298,527	+		PP_3769	0.88	-1.7
4,298,527	+		PP_3769	0.88	+0.0
4,298,545	+				+0.4
4,298,546	-				+0.2
4,298,546	-				-0.8
4,298,631	+				-0.0
4,298,636	+				+0.2
4,298,636	+				-0.4
4,298,637	-				-0.4
4,298,649	+				-1.7
4,298,650	-				-0.8
4,298,744	+		PP_3770	0.44	-1.9
4,298,745	-		PP_3770	0.45	-0.6
4,298,745	-		PP_3770	0.45	-0.7
4,298,745	-		PP_3770	0.45	-0.3
4,298,872	-				-0.8
4,298,950	+				+0.8
4,298,950	+				-1.1
4,298,951	-				-0.5
4,298,962	+				-2.5
4,298,962	+				-0.1
4,298,962	+				+0.6
4,298,963	-				+0.0
4,299,000	-		PP_3771	0.17	-0.4
4,299,163	+		PP_3771	0.59	-4.3
4,299,164	-		PP_3771	0.59	+0.6
4,299,191	+		PP_3771	0.66	+0.1
4,299,191	+		PP_3771	0.66	-0.6
4,299,191	+		PP_3771	0.66	-2.4
4,299,191	+		PP_3771	0.66	-0.1
4,299,192	-		PP_3771	0.66	-0.4
4,299,262	+		PP_3771	0.84	-0.1
4,299,263	-		PP_3771	0.84	+0.3
4,299,263	-		PP_3771	0.84	-1.2
4,299,263	-		PP_3771	0.84	-0.1
4,299,365	+				+0.9
4,299,365	+				-0.1
4,299,365	+				-0.4
4,299,369	+				+0.4
4,299,369	+				-0.7
4,299,381	+				+0.5
4,299,392	+				+0.6
4,299,392	+				-0.1