Strain Fitness in Pseudomonas putida KT2440 around PP_3646

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,140,922	+				-0.4
4,140,922	+				-0.8
4,140,923	-				+0.9
4,140,923	-				-0.1
4,140,923	-				-0.1
4,141,081	-				+0.2
4,141,194	+		PP_3645	0.19	+1.5
4,141,194	+		PP_3645	0.19	+0.3
4,141,194	+		PP_3645	0.19	-0.1
4,141,254	+		PP_3645	0.26	-1.1
4,141,515	+		PP_3645	0.57	-2.0
4,141,516	-		PP_3645	0.57	+0.4
4,141,516	-		PP_3645	0.57	+0.5
4,141,596	+		PP_3645	0.67	+0.3
4,141,596	+		PP_3645	0.67	+0.8
4,141,623	+		PP_3645	0.70	+0.8
4,141,623	+		PP_3645	0.70	-0.4
4,141,623	+		PP_3645	0.70	-1.4
4,141,646	+		PP_3645	0.73	+0.5
4,141,769	+		PP_3645	0.88	-1.3
4,141,769	+		PP_3645	0.88	+0.5
4,141,769	+		PP_3645	0.88	-0.5
4,141,769	+		PP_3645	0.88	-0.2
4,141,769	+		PP_3645	0.88	+1.0
4,141,770	-		PP_3645	0.88	+0.2
4,141,770	-		PP_3645	0.88	+0.8
4,142,066	-		PP_3646	0.13	-3.1
4,142,189	+		PP_3646	0.22	-0.9
4,142,190	-		PP_3646	0.22	+0.7
4,142,210	+		PP_3646	0.23	-0.7
4,142,210	+		PP_3646	0.23	-1.8
4,142,211	-		PP_3646	0.23	+0.1
4,142,279	+		PP_3646	0.28	-3.3
4,142,280	-		PP_3646	0.28	-1.2
4,142,340	-		PP_3646	0.32	-1.0
4,142,492	+		PP_3646	0.42	-0.0
4,142,583	+		PP_3646	0.48	+1.2
4,142,702	+		PP_3646	0.56	+0.2
4,142,702	+		PP_3646	0.56	+1.9
4,142,702	+		PP_3646	0.56	+0.9
4,142,703	-		PP_3646	0.56	-0.5
4,142,703	-		PP_3646	0.56	-2.1
4,142,966	+		PP_3646	0.74	-1.1
4,142,967	-		PP_3646	0.74	-1.6
4,142,967	-		PP_3646	0.74	-2.2
4,143,192	-		PP_3646	0.89	+0.1
4,143,219	+				+0.6
4,143,219	+				+1.8
4,143,220	-				-1.6
4,143,279	-				-0.2
4,143,279	-				-0.5
4,143,347	+				-1.7
4,143,347	+				+0.6
4,143,348	-				+1.0
4,143,348	-				-0.3
4,143,380	+				+0.7
4,143,521	+		PP_3647	0.33	+0.3
4,143,537	-		PP_3647	0.36	+3.1
4,143,605	+		PP_3647	0.50	-0.1
4,143,606	-		PP_3647	0.50	-1.4
4,143,725	+		PP_3647	0.75	+0.9
4,143,806	+				-2.1
4,143,806	+				-0.4
4,143,806	+				-0.7
4,143,807	-				+0.3
4,143,848	+				+0.2
4,143,848	+				+0.2
4,143,848	+				+0.3
4,143,849	-				+0.0
4,143,849	-				-1.1
4,143,849	-				-1.2
4,143,849	-				-0.6
4,143,963	-				-0.3
4,143,963	-				-0.2
4,144,030	+		PP_3648	0.15	-2.2
4,144,031	-		PP_3648	0.16	-0.4
4,144,031	-		PP_3648	0.16	+0.2
4,144,096	+		PP_3648	0.32	+0.6
4,144,096	+		PP_3648	0.32	-0.4
4,144,097	-		PP_3648	0.33	-1.2
4,144,155	-		PP_3648	0.47	+1.6
4,144,155	-		PP_3648	0.47	+1.2
4,144,276	+		PP_3648	0.78	+0.6
4,144,276	+		PP_3648	0.78	-1.2
4,144,276	+		PP_3648	0.78	-0.1