Strain Fitness in Pseudomonas putida KT2440 around PP_3411

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,859,098	+				-1.5
3,859,176	+				-0.7
3,859,176	+				-0.7
3,859,177	-				-1.8
3,859,177	-				-1.6
3,859,177	-				+0.7
3,859,423	-		PP_3410	0.34	-1.7
3,859,835	-		PP_3410	0.89	-0.2
3,859,853	+				+0.8
3,859,853	+				-0.4
3,859,878	+				-0.5
3,859,878	+				+0.0
3,859,878	+				-0.5
3,859,878	+				+0.7
3,859,879	-				+0.2
3,859,996	+				-3.4
3,860,140	+		PP_3411	0.63	-0.6
3,860,200	+		PP_3411	0.88	-0.8
3,860,288	-				-0.2
3,860,303	+				+0.5
3,860,303	+				-1.0
3,860,304	-				+0.3
3,860,304	-				+0.5
3,860,304	-				+0.5
3,860,304	-				-0.1
3,860,304	-				-0.4
3,860,304	-				+0.3
3,860,328	+				-0.1
3,860,328	+				+0.0
3,860,329	-				+0.5
3,860,363	-				-0.0
3,860,399	+				-0.4
3,860,399	+				+0.7
3,860,400	-				+1.5
3,860,434	+				+0.2
3,860,482	+				-1.2
3,860,482	+				-2.0
3,860,483	-				+0.8
3,860,505	+				-0.6
3,860,572	-		PP_3412	0.20	+0.4
3,860,595	+		PP_3412	0.24	+0.9
3,860,596	-		PP_3412	0.24	+0.5
3,860,711	+		PP_3412	0.42	-0.3
3,860,711	+		PP_3412	0.42	+0.4
3,860,711	+		PP_3412	0.42	+0.7
3,860,711	+		PP_3412	0.42	+0.1
3,860,711	+		PP_3412	0.42	+0.3
3,860,712	-		PP_3412	0.43	-1.3
3,860,740	-		PP_3412	0.47	-1.1
3,860,810	+		PP_3412	0.59	-0.1
3,860,811	-		PP_3412	0.59	-1.6
3,860,981	+		PP_3412	0.86	+1.0
3,861,059	+				+0.2
3,861,060	-				+0.3
3,861,060	-				-0.6
3,861,060	-				-0.3
3,861,203	-				+0.3