Strain Fitness in Pseudomonas putida KT2440 around PP_2978

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,376,987	+		PP_2977	0.12	+0.4
3,376,988	-		PP_2977	0.12	+0.8
3,377,070	+		PP_2977	0.21	-0.0
3,377,180	-		PP_2977	0.33	-2.6
3,377,328	+		PP_2977	0.49	-0.5
3,377,328	+		PP_2977	0.49	+0.4
3,377,329	-		PP_2977	0.49	-1.0
3,377,329	-		PP_2977	0.49	+0.2
3,377,364	-		PP_2977	0.53	-0.8
3,377,364	-		PP_2977	0.53	+0.3
3,377,490	+		PP_2977	0.67	+1.4
3,377,491	-		PP_2977	0.67	-0.2
3,377,491	-		PP_2977	0.67	-0.9
3,377,566	-		PP_2977	0.76	-0.4
3,377,566	-		PP_2977	0.76	+0.3
3,377,601	+		PP_2977	0.79	-0.5
3,377,601	+		PP_2977	0.79	+0.3
3,377,602	-		PP_2977	0.80	-0.5
3,377,602	-		PP_2977	0.80	+0.5
3,377,602	-		PP_2977	0.80	+0.1
3,377,602	-		PP_2977	0.80	-0.1
3,377,622	-		PP_2977	0.82	+0.0
3,377,716	+				-0.7
3,377,720	+				-0.5
3,377,746	+				+0.8
3,377,746	+				+1.5
3,377,747	-				-0.4
3,377,747	-				-1.1
3,377,748	+				-0.8
3,377,748	+				+0.1
3,377,749	-				-2.5
3,377,749	-				+0.5
3,377,749	-				+0.5
3,377,749	-				+0.9
3,377,829	-				-0.2
3,377,829	-				-0.3
3,377,836	+				-0.9
3,377,837	-				+0.3
3,377,844	-				-1.5
3,377,877	-				-1.3
3,377,877	-				+0.4
3,377,906	-				-0.3
3,377,990	+				+0.2
3,377,990	+				-0.6
3,377,991	-				+0.1
3,378,117	-		PP_2978	0.41	-0.1
3,378,117	-		PP_2978	0.41	-0.4
3,378,163	+		PP_2978	0.52	-1.5
3,378,275	+		PP_2978	0.80	-0.9
3,378,275	+		PP_2978	0.80	-1.5
3,378,276	-		PP_2978	0.81	-0.9
3,378,276	-		PP_2978	0.81	+0.5
3,378,291	-		PP_2978	0.84	-3.2
3,378,291	-		PP_2978	0.84	-0.4
3,378,349	+				-0.8
3,378,349	+				+1.0
3,378,350	-				-2.3
3,378,351	+				+0.4
3,378,351	+				+0.9
3,378,351	+				+0.9
3,378,351	+				+0.9
3,378,352	-				-1.2
3,378,479	+		PP_2979	0.41	-0.8
3,378,479	+		PP_2979	0.41	-0.6
3,378,503	+		PP_2979	0.47	+0.4
3,378,503	+		PP_2979	0.47	+1.6
3,378,504	-		PP_2979	0.47	-0.1
3,378,504	-		PP_2979	0.47	-2.2
3,378,525	-		PP_2979	0.52	-0.6
3,378,547	-		PP_2979	0.57	+0.0
3,378,606	-		PP_2979	0.71	+0.5
3,378,606	-		PP_2979	0.71	-0.2
3,378,617	+		PP_2979	0.73	+0.2
3,378,618	-		PP_2979	0.74	+0.1
3,378,618	-		PP_2979	0.74	+0.6
3,378,659	-		PP_2979	0.83	-1.5
3,378,659	-		PP_2979	0.83	-0.2
3,378,719	+				-1.8
3,378,735	+				+0.4
3,378,762	-		PP_2980	0.12	-3.2
3,378,813	+		PP_2980	0.33	-1.5
3,378,814	-		PP_2980	0.34	-0.6
3,378,835	+		PP_2980	0.43	+0.7
3,378,875	+		PP_2980	0.59	-0.4
3,378,908	-		PP_2980	0.73	-0.6
3,378,908	-		PP_2980	0.73	-0.6
3,378,908	-		PP_2980	0.73	-0.2
3,378,916	-		PP_2980	0.77	+0.2
3,379,014	+				-0.9
3,379,015	-				+0.2
3,379,066	+				+0.1
3,379,081	+				-0.4
3,379,115	+				+0.9
3,379,116	-				-0.8
3,379,116	-				-0.4
3,379,137	-				-0.1
3,379,178	+				+0.1
3,379,179	-				+1.8
3,379,233	+				+0.2
3,379,233	+				-1.0
3,379,255	+				+0.1
3,379,272	-				+0.1
3,379,303	+		PP_2981	0.13	-3.1
3,379,303	+		PP_2981	0.13	-1.4
3,379,304	-		PP_2981	0.13	+0.4
3,379,304	-		PP_2981	0.13	+0.9
3,379,307	+		PP_2981	0.13	+0.2
3,379,307	+		PP_2981	0.13	-0.4
3,379,307	+		PP_2981	0.13	+0.5
3,379,307	+		PP_2981	0.13	-2.2
3,379,307	+		PP_2981	0.13	+1.4
3,379,307	+		PP_2981	0.13	+0.5
3,379,307	+		PP_2981	0.13	+0.4
3,379,307	+		PP_2981	0.13	-0.1
3,379,307	+		PP_2981	0.13	-1.1
3,379,308	-		PP_2981	0.13	+0.2
3,379,308	-		PP_2981	0.13	+0.2
3,379,308	-		PP_2981	0.13	+0.5
3,379,308	-		PP_2981	0.13	+0.5
3,379,308	-		PP_2981	0.13	-0.9
3,379,308	-		PP_2981	0.13	-0.9