Strain Fitness in Pseudomonas putida KT2440 around PP_2932

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,332,896	+		PP_2930	0.77	+0.6
3,332,983	-		PP_2930	0.87	-0.3
3,333,041	+				+1.3
3,333,041	+				+0.7
3,333,041	+				+0.7
3,333,042	-				+1.0
3,333,042	-				+0.0
3,333,119	+				+0.7
3,333,119	+				+0.3
3,333,119	+				+1.8
3,333,138	+				-2.4
3,333,138	+				+0.8
3,333,138	+				-0.9
3,333,138	+				-0.4
3,333,138	+				+0.7
3,333,139	-				-0.2
3,333,139	-				+0.0
3,333,139	-				+0.2
3,333,147	+				+0.7
3,333,148	-				+1.1
3,333,341	+		PP_2931	0.34	+0.3
3,333,342	-		PP_2931	0.34	+0.3
3,333,491	-		PP_2931	0.55	-1.0
3,333,491	-		PP_2931	0.55	-0.0
3,333,770	-				-1.4
3,333,853	-				+1.0
3,333,949	+				+0.6
3,333,984	-				-3.4
3,333,984	-				-3.8
3,334,285	+		PP_2932	0.25	-2.2
3,334,285	+		PP_2932	0.25	+0.0
3,334,285	+		PP_2932	0.25	-3.8
3,334,285	+		PP_2932	0.25	-2.1
3,334,286	-		PP_2932	0.25	+1.4
3,334,383	-		PP_2932	0.31	-1.6
3,334,383	-		PP_2932	0.31	-1.5
3,334,486	+		PP_2932	0.37	-2.0
3,334,551	+		PP_2932	0.41	-0.3
3,334,689	+		PP_2932	0.49	-1.5
3,334,689	+		PP_2932	0.49	-1.8
3,334,690	-		PP_2932	0.49	+0.4
3,334,690	-		PP_2932	0.49	-1.5
3,334,691	+		PP_2932	0.49	-1.4
3,334,692	-		PP_2932	0.49	-1.2
3,334,692	-		PP_2932	0.49	-1.5
3,334,693	+		PP_2932	0.49	-0.2
3,334,693	+				-0.5
3,334,693	+		PP_2932	0.49	-1.3
3,334,693	+		PP_2932	0.49	-0.1
3,334,693	+		PP_2932	0.49	-0.2
3,334,694	-		PP_2932	0.49	-0.8
3,334,694	-		PP_2932	0.49	+0.4
3,334,694	-		PP_2932	0.49	+0.5
3,334,771	-		PP_2932	0.54	-2.4
3,334,846	-		PP_2932	0.58	-1.2
3,335,116	+		PP_2932	0.74	-1.1
3,335,302	+		PP_2932	0.85	+0.3
3,335,303	-		PP_2932	0.85	-1.8
3,335,303	-		PP_2932	0.85	-0.9
3,335,452	+				-0.2
3,335,453	-				-2.3
3,335,550	+				-1.5
3,335,606	+				-0.1
3,335,606	+				+0.5
3,335,607	-				-0.6
3,335,607	-				-0.4
3,335,607	-				+1.3
3,335,654	+				+1.0
3,335,655	-				+1.3
3,335,655	-				+1.5
3,335,689	-				-0.8
3,335,689	-				-2.3
3,335,689	-				-0.2
3,335,776	+				-0.1
3,335,815	+				+0.9
3,335,880	-		PP_2933	0.15	-0.2
3,335,949	+		PP_2933	0.23	+0.5
3,335,977	+		PP_2933	0.27	+0.6
3,335,978	-		PP_2933	0.27	-0.7
3,335,978	-		PP_2933	0.27	-0.2
3,335,982	+		PP_2933	0.27	-0.6
3,335,982	+		PP_2933	0.27	-0.5
3,335,982	+		PP_2933	0.27	-3.3
3,336,029	+		PP_2933	0.33	+0.7
3,336,030	-		PP_2933	0.33	+0.1
3,336,030	-		PP_2933	0.33	-1.5
3,336,096	+		PP_2933	0.41	-2.9
3,336,096	+				-0.7
3,336,097	-		PP_2933	0.41	-0.7
3,336,097	-		PP_2933	0.41	-0.2
3,336,097	-		PP_2933	0.41	+0.1
3,336,102	+		PP_2933	0.41	+2.3
3,336,102	+		PP_2933	0.41	+0.5
3,336,103	-		PP_2933	0.42	-0.3
3,336,103	-		PP_2933	0.42	-2.3
3,336,129	+		PP_2933	0.45	-0.6
3,336,372	+		PP_2933	0.73	-2.3
3,336,453	+		PP_2933	0.83	-0.0
3,336,454	-		PP_2933	0.83	+0.8
3,336,454	-		PP_2933	0.83	-1.4