Strain Fitness in Pseudomonas putida KT2440 around PP_2908

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,306,044	-				+0.5
3,306,062	-				+0.6
3,306,132	-				+2.0
3,306,132	-				+0.2
3,306,149	+				+0.2
3,306,190	-				+0.5
3,306,360	-		PP_2907	0.31	-0.5
3,306,360	-		PP_2907	0.31	+1.3
3,306,463	+		PP_2907	0.46	+0.8
3,306,484	+		PP_2907	0.49	-0.6
3,306,484	+		PP_2907	0.49	+0.6
3,306,609	+		PP_2907	0.68	+0.7
3,306,846	+				+0.4
3,306,846	+				+0.3
3,306,846	+				+0.1
3,306,847	-				+1.6
3,306,904	+				+0.9
3,307,123	+		PP_2908	0.32	-2.4
3,307,124	-				+1.0
3,307,231	-		PP_2908	0.47	-0.1
3,307,231	-		PP_2908	0.47	-1.8
3,307,231	-		PP_2908	0.47	-0.4
3,307,253	+		PP_2908	0.50	+0.7
3,307,254	-		PP_2908	0.50	-2.1
3,307,254	-		PP_2908	0.50	-1.8
3,307,254	-		PP_2908	0.50	-0.1
3,307,348	+		PP_2908	0.64	-1.5
3,307,349	-		PP_2908	0.64	+0.6
3,307,474	+		PP_2908	0.82	-2.8
3,307,631	-				+0.0
3,307,673	+				-1.7
3,307,673	+				-2.0
3,307,854	+				+0.5
3,307,968	+		PP_2909	0.18	+0.5
3,307,969	-		PP_2909	0.18	-0.7
3,308,172	+		PP_2909	0.39	-1.0
3,308,173	-		PP_2909	0.39	-0.1
3,308,196	+		PP_2909	0.41	+0.3
3,308,197	-		PP_2909	0.41	-0.4
3,308,197	-		PP_2909	0.41	+0.3
3,308,197	-		PP_2909	0.41	-1.0
3,308,520	+		PP_2909	0.74	-1.5
3,308,521	-		PP_2909	0.74	-0.4
3,308,521	-		PP_2909	0.74	+0.7
3,308,521	-		PP_2909	0.74	+0.4
3,308,550	+		PP_2909	0.77	+1.0