Strain Fitness in Pseudomonas putida KT2440 around PP_2815

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,210,002	-		PP_2814	0.17	-0.7
3,210,058	+		PP_2814	0.23	+0.5
3,210,061	+		PP_2814	0.24	+0.0
3,210,062	-		PP_2814	0.24	-1.5
3,210,062	-		PP_2814	0.24	+0.4
3,210,305	-		PP_2814	0.52	-0.0
3,210,404	-		PP_2814	0.63	+0.2
3,210,860	-				+0.7
3,210,888	+				-0.3
3,210,888	+				+0.6
3,210,889	-				+2.3
3,210,889	-				-0.3
3,211,018	-				-1.0
3,211,018	-				+0.4
3,211,219	+				+1.5
3,211,220	-		PP_2815	0.20	-2.2
3,211,486	-		PP_2815	0.42	-0.2
3,211,491	+		PP_2815	0.42	-1.0
3,211,565	-		PP_2815	0.48	-1.0
3,211,565	-		PP_2815	0.48	+1.0
3,211,565	-		PP_2815	0.48	-0.2
3,211,787	+		PP_2815	0.66	-0.8
3,211,787	+		PP_2815	0.66	-3.7
3,212,088	+		PP_2815	0.90	-2.5
3,212,131	-				-1.1
3,212,215	+				-0.1
3,212,216	-				-0.2
3,212,243	+				-2.9
3,212,243	+				+0.1
3,212,244	-				+0.1
3,212,244	-				+0.2
3,212,281	-				+0.3
3,212,635	+		PP_2816	0.63	+0.2
3,212,635	+		PP_2816	0.63	+0.4
3,212,784	+		PP_2816	0.90	+0.1
3,212,785	-		PP_2816	0.90	+0.7
3,212,785	-		PP_2816	0.90	-1.0
3,213,040	-				+0.5